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Report for CCDS49501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49501.1 Public Mus musculus 14 Nynrin 23 108 98 CCDS HistoryNCBI Gene:277154Re-query CCDS DB by CCDS ID:49501.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49501.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100529.9 ENSMUSP00000098098.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100529.9Link to Ensembl Protein Viewer:ENSMUSP00000098098.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100529Re-query CCDS DB by Protein ID:ENSMUSP00000098098
Original member Current member EBI ENSMUST00000168479.2 ENSMUSP00000129557.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168479.2Link to Ensembl Protein Viewer:ENSMUSP00000129557.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168479Re-query CCDS DB by Protein ID:ENSMUSP00000129557
Original member Current member NCBI NM_001040072.1 NP_001035161.1 Accepted alive Link to Nucleotide Sequence:NM_001040072.1Link to Protein Sequence:NP_001035161.1Re-query CCDS DB by Nucleotide ID:NM_001040072Re-query CCDS DB by Protein ID:NP_001035161Link to BLAST:NP_001035161.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035161.1 1840 Q5DTZ0 1840 100% 0 0

Chromosomal Locations for CCDS 49501.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55854229 55854426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55862953 55863611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55863733 55865133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55865959 55866089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55866211 55866307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55868021 55868122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55868414 55868515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55870128 55872960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5523 nt):
ATGCTTTTGTCGGGGGGTAAACCCCCAGCGCAGGAATGGTTCATGGTGCAGACAAAATCGAAGCCCCGGG
TACACCGGCAGCGGCTGCAAGTCCAGCGCATCTTCAGGGTCAAGGTGACCGCTTTCCAGAGCCGTCCTGA
CACCCCTTACTTTTGGCTGCAGCTGGAGGGGCCCCGGGAAAATACGGGCAAAGCCAAGGAATATCTGAAA
GGTCTGTGCAACCCAGAGCTATGGAAGGAGGTTCGCTACCCACCAGTCCTGCACTGCGCCTTCCTTGGGG
CACAAGGCTTGTTCCTGGACTGCCTCTGCTGGAGTACCCTGGCCTACCTGGTGCCTGGTCCCCCTGGCTC
CTTAATGGTGGGTGGGCTGACCGAGTCTTTTACCATGACACAGAACTGGCTGGAGGAGCTGGTGGCACGG
TTGCGCTGGGGCCCTGCCCCAATGATCACCCCTCGAGGGGTTTGGGAGACAGAGGTGACCCGGGCTTTTG
GGGCTCTGGTGTGGATCCGTTGTGACAAGTATGCAGGAGACTTGCTGCAGCTTCCTCCAGCAGTCCAGGA
GCTGCTTCTCAGTTTGGTCCGAGATGCTGCCGGCAAGGAAGACATCATTGAGTGGCTCGGCCATTTTGGC
ATCTCTGGTACTTGCCCCAACCCAGAGATCCTGATCTGCCTTGCCCGGCAGCAGAAGGAAAGCGCATCCC
TGGTGACCATAAAAGAGAGCCCCGGGACGCTCCAAGAGATAGGAGCCTTGAATCGGGCTTCAGAAAATTC
AAAGAAAACAACAAGTTCGGGAGCCGCTGGGTCCCTGACCCAAGCTCAGAGCCCTCCGGCGCAGGAGACA
GCAGACCAGCTAGCACGGGACCAGTCTAACAAGCAAGGTGACGAAACGAACAGTGTTGGAGAGGAAGGGA
CCGCTACACAAGACACCAGCAGCCAGGACTCTGAGAATCCCACACAAGCCCTCTTGCAGCAAAAGCAGGT
ACCGAAGAATGAAGAGAGAATCTCATTGCTGTTGCCAGTGTCAGCTCTGAGCGCGTACACATCCTGGAAG
GTCTGGGCCCCTGGGACAGCCTTTGGGCCCTCGTGGCCAGGGACCATTGCTGCCACCTTCTGGAAGATCA
ATGAACTGCAGTCTCTTCACCTAGCCTGGCTCCTGTCCCAGGCTTGCTTAAATTTCCCCTTCTGGCAGAG
GCCCACGGGCCCCATTCAGCTGAAGCTGCCAGGACGGAATCCTTTGCCCTTAAAGCTGGAATGGAAGCAG
AAAGAGCTGGTTCCTCTGTCCAGTGCAGGAAGCCCAGCTTGTAGACCAGGTGGGGACCTAGGGAGGGAGA
CAGCCCTAAAGCATAGCCCGAGGCCGGAGATTCCCTCCAAAATCATCAGTTTATCGGTGGTGCCAGGGGG
TTGTGGTATCAAAGAGAAGGTTAGCCCGGGACTTCTGCAAGTAGGGCAGTCTTCAACATCTGTGGGAGAT
AAAGGAATTTCACTGTCAGATTGTAAAGGCCTGGAAAAGCCGTTCTCTCTAGCACTGTCCACAGAGCAAG
GGGGATCCACAGCTCAAGAGAGGCCACTGGCTCAAGTACCCGAAGCTCCAACGGTGTCTGAAACTCTTCA
AGTGGCCACGGCTGCAGAGGTGTCCAACGTTGAACACCCACCCACCGGGGAGGGGCTGCCTGCAACCCCC
AAAGTGCCTACAGCCCTAAAGAAGCCAGCAGTGTACACAGAGCCCACAGCTCCCAAAGTGCCTTCGGCTC
CAACAGAACCAGCAGCTCCTGCCACGCCCACAGCCCCACAAACTCCTACAGCTCAGAAAACACCTTCAGT
GAAAACACTCGCAGGCCTCCAGACCCCCAAAGTTCAAAGTGAGACCATAGCTACAGCAGGGTCTGAAGTT
CCCAAAGCGCCTGCAGCTTCAGCAGTTGCGGGGCCGACCGTGGATGTAGCCCAACTCCTGAGTGAGGTTC
AGGCTTCAAAGAATAGAGCCATCATGTTGAAGGTCCAGGGAAAGCCCGGAAGGCAGGGTTTCCAGCCCAG
TAGCACCGTGCCCTCCAGAAGTAAGCATCAGTTCCTAAAGGAAGGACTTCTTGGGGCTTGGGAGGGGTCC
CAGAGGCTGTCACCTCACTCCCAGGGCACCAACATAGTGACCAGCTTCCAGAGGTACAACGAGGCCTTGA
ACACACCGTTCGAGATGAACTTGTCTGAGGAGCCTGGAAATCCAGGGCTGAGGAGAGTGGTCATTGACGG
CAGCAGTGTGGCCATGGTACATGGCCTGCAGCACTTCTTCTCGTGCCGAGGCATCGCCATGGCCGTGCAG
TACTTCTGGAATCGCGGACACCGAGAGATCACCGTGTTCGTACCCACCTGGCAGCTGAAGAAAAACCGGA
GGGTGAGAGAGAGCCACTTTCTGACGAAGCTTCACAGACTGAAGATGCTGTCTATCACTCCCTCGCAGCT
GGAGAATGGCAAAAAGATCACCACTTACGATTACAGGTTCATGGTAAAGCTGGCAGAGGAGACAGATGGA
GTCATTGTCACCAATGAGCAGATCCACATCCTCATGAATAATTCCAAGAAACTGATGGTCAAAGATCGCC
TGCTGCCCTTCACCTTTGCCGGGAGTCTCTTTATGGTACCAGATGACCCCCTGGGCCGTGACGGCCCCAC
CTTGGAGGAATTTCTGAAGAAGCCAAACAGGTTGGACATGGACATTGGCAATTTCTTGAAGGTGTGGAAG
ACCCTGCCTCCCAGCTCAGCCAGCATCTCTGAACTGAGTGATGACGCTGACGCCGAACCTTTGGAGGATC
CACAGGACGTAGAAGAAGCAGGGAAGGAGGAGGGAAGCCTGGAAGAGGAGCCAGGAATCCCAAAGCCCGA
TGAAGAAGATGAGCAGGACACTAACCCTGTGTCGGTGTTTGGGGTCGAGTGCCCTTCATTTTCCGAGGAA
ATCCTCCAGTGTCTCAGCCTGCATGACCCCTCTGAGGGGACTTTAGACATCGACCTTCTGCCTGTGGTGT
CCTCTCCGTACCTGGATGTCCCCTGGGATGGGAAGGCTCCCTGTCAGCAGGTTCTGGCCCAGCTGGCGCA
GCTTAACATCCCGAGCAACTTCACCGCGCTATCCTTCTTCATGGGCTTCATGGATTCCCACCGGGATGTT
ATCTCTGACTATGAAGATCTCGTGGGCCCCCTGCACGGCCTCCTCAAGCAGAAGCCGGACTGGCAGTGGA
ACCAGGAGCACGAGAAGTCCTTCCTGGCCCTGAAACGAGCCCTAGTGTGCGCCCTCTGCCTGTCAACCCC
CAACCCCAACCTGCCCTTCTACCTGGAAGTGACTGTCAGCCAAGTGTCACTGACAGCTAGCTTGCACCAG
GAGCACTCAGGAAGGAAGCACCCCATCGCTTATACCTCGAAACCTCTCCTCCCCGATGAAGACAGCGAGG
GTCCTCAGTCAGGGGGGGACAGCCCCTATGCTGTGGCTTGGGCCCTCAAGCATTTTGCCCGATGCGTTGG
AGACAATCCAGTGGTTCTACGTCTTTCCTATGCCTCCCGGACCACGGTGGATAATGAGGCATGGGATAGC
CGTAGGGCTTCGAAAGCGTGGTTGATTCGGTGGTCTCTCTTGCTGCAGGACAAAGGCAAGAGGGAATTGG
AATTGTCCCTTCTCCAGGGCCTGCTGGGGGAGAACCAGCTGCTGACACCCCCTTCCTCCATGCCCCGAGT
TTTCCAGCCTCTGCCTCCTTCTTCTGACCTGTCTACTTTTATCTGTGTCCATGTGTCTGGCTATTGCTTC
TACCGTGACGATGAGTTGTGTGCTGGCTTTGGTCTCTACATCTTGTCGCCCACCAGCCCTCCAGTCTCCC
TTGCCTTTTCCTGTTCTCCTTACACAACCACATACGCCCACCTGGCAGCCGTGGCCTGCGGCTTAGAGCG
CTTCGGCCAGTCCCAGCACCCTGTGGTTTTCCTCACCCACTGCAACTGGATCTTCAGCGTTCTCTGGGAG
CTCCTGCCCCTCTGGAGAGTCCGGGGCTTCCTGTCATCTGACGGGGCTTCACTACCTCATCCAAGCCTGC
TGTCCTACATCATCTCTCTCACGTCTGGCTTTTCACCCCTTCCCTTTATCTACCGAACCTCTTATCGGGG
CTCTCTGTTTGCTGTGACAGTGGACACTCTGGCCAAGCAGGGTGCCCAAGGGGGCGGGCAGTGGTGGGAT
TTGCCAAAGGATGTGCCAGTGCCAATGGTGACTCCCCATCCTAAAGGCAGGAAGCCCAACTTGCTGGCCT
TACAGCTGAGTGATACCACCCTGGCCGATATCATTGCCAAGTTGCAGGCAGGACAGAAATTGTCCGGGCC
CTCCCCTTTCAGTTCTGCCTTTAACTCACTCAGCCTGGACCAAGACAGTGGCCTGCTCATGTTCAAGGGG
GAAAGGCATCCCAGGGTTTGGGTAGTCCCAAGGCAACTTCGGAGGGATCTGATTTTCTCTGTGCATGACA
GCCCCATTGGGGAACACCAGGGGCTAGAGGACACCTATAAGACGGTGAGGCTGCTGGGATGGTGGCCTGG
GATGCAGGACCACGTGAGAGATTACTGCAGGAGCTGTTTGTTCTGCATCCCCCGGAATCTCATAGGCGGG
GAGCTGAAAGTTATCGAGTCCCCATGGCCTCTCAGGTCGACAGCCCCTTGGTCCAGTCTGCAGATTGAGG
TGGTGGGTCCAGTCACTGTAAGTGAGGAGGGACATAAGCACGTGCTCATTGTGGCCGATGCCAACACCCG
GTGGGTGGAGGCATTCCCTCTGAAGCCCTATACGCACGTGGCTGTGGCCCAGGTGCTCCTCCAGCATGTG
TTTGCAAGGTGGGGCGTTCCCATCAGACTGGAGGCCGCCCAAGGCCCCCAGTTTGCCCGCCATGTTCTGG
TGAGCTGTGGGCTGGCCCTGGGAGCCCAAGTGACTACACTGAGTAGGGCCCTCCAGTTCCCCTGCCTGAT
GAGTTCAGAGGCCTACTGGGAATTCAAGAGGGCCCTGAAGGAGTTCATCTTTCTGTATGGCAAGAAGTGG
GCGGCCTCTCTGCCCTTGCTGCACCTGGCTTTTAGGGCCTCCACCACAGAGGCCACACCGTTCCAGGTGC
TGACCGGGGGCGAGATGAAGCTGATGGAGCCCGTGTGGTGGGAGATGAGCCGGGCGAACATTGAAGGGCT
CAAGATGGACGCTTTCTTGCTGCAGCTGATGCGGGAGCTGTTGGACCTCCACTGGAGAGTGGCCGAGAAG
GCCAGCGAGAAGGCCGAGAACAGGCGTTTCAAGAGGGAGAGCCAGGAGAACGAGTGGAGTGTGGGCGACC
AGGTCCTCTTGTTGTCTCTCCCCAGGAATGGCAGCAGTGCCAAATGGATGGGTCCTTTCTATATTGGGGA
CCGGTTGAGCCTATCACTCTATAGGGTGTGGGGCTTCCCAGTCCCAGACAAGCTGGGCTGTGTCTATCCT
AGCAGTCTGATGAAGGCCTTTCCCAAGCATGACACGCCCCTGTCCCTCGACGTGGAGCAGTGA

Translation (1840 aa):
MLLSGGKPPAQEWFMVQTKSKPRVHRQRLQVQRIFRVKVTAFQSRPDTPYFWLQLEGPRENTGKAKEYLK
GLCNPELWKEVRYPPVLHCAFLGAQGLFLDCLCWSTLAYLVPGPPGSLMVGGLTESFTMTQNWLEELVAR
LRWGPAPMITPRGVWETEVTRAFGALVWIRCDKYAGDLLQLPPAVQELLLSLVRDAAGKEDIIEWLGHFG
ISGTCPNPEILICLARQQKESASLVTIKESPGTLQEIGALNRASENSKKTTSSGAAGSLTQAQSPPAQET
ADQLARDQSNKQGDETNSVGEEGTATQDTSSQDSENPTQALLQQKQVPKNEERISLLLPVSALSAYTSWK
VWAPGTAFGPSWPGTIAATFWKINELQSLHLAWLLSQACLNFPFWQRPTGPIQLKLPGRNPLPLKLEWKQ
KELVPLSSAGSPACRPGGDLGRETALKHSPRPEIPSKIISLSVVPGGCGIKEKVSPGLLQVGQSSTSVGD
KGISLSDCKGLEKPFSLALSTEQGGSTAQERPLAQVPEAPTVSETLQVATAAEVSNVEHPPTGEGLPATP
KVPTALKKPAVYTEPTAPKVPSAPTEPAAPATPTAPQTPTAQKTPSVKTLAGLQTPKVQSETIATAGSEV
PKAPAASAVAGPTVDVAQLLSEVQASKNRAIMLKVQGKPGRQGFQPSSTVPSRSKHQFLKEGLLGAWEGS
QRLSPHSQGTNIVTSFQRYNEALNTPFEMNLSEEPGNPGLRRVVIDGSSVAMVHGLQHFFSCRGIAMAVQ
YFWNRGHREITVFVPTWQLKKNRRVRESHFLTKLHRLKMLSITPSQLENGKKITTYDYRFMVKLAEETDG
VIVTNEQIHILMNNSKKLMVKDRLLPFTFAGSLFMVPDDPLGRDGPTLEEFLKKPNRLDMDIGNFLKVWK
TLPPSSASISELSDDADAEPLEDPQDVEEAGKEEGSLEEEPGIPKPDEEDEQDTNPVSVFGVECPSFSEE
ILQCLSLHDPSEGTLDIDLLPVVSSPYLDVPWDGKAPCQQVLAQLAQLNIPSNFTALSFFMGFMDSHRDV
ISDYEDLVGPLHGLLKQKPDWQWNQEHEKSFLALKRALVCALCLSTPNPNLPFYLEVTVSQVSLTASLHQ
EHSGRKHPIAYTSKPLLPDEDSEGPQSGGDSPYAVAWALKHFARCVGDNPVVLRLSYASRTTVDNEAWDS
RRASKAWLIRWSLLLQDKGKRELELSLLQGLLGENQLLTPPSSMPRVFQPLPPSSDLSTFICVHVSGYCF
YRDDELCAGFGLYILSPTSPPVSLAFSCSPYTTTYAHLAAVACGLERFGQSQHPVVFLTHCNWIFSVLWE
LLPLWRVRGFLSSDGASLPHPSLLSYIISLTSGFSPLPFIYRTSYRGSLFAVTVDTLAKQGAQGGGQWWD
LPKDVPVPMVTPHPKGRKPNLLALQLSDTTLADIIAKLQAGQKLSGPSPFSSAFNSLSLDQDSGLLMFKG
ERHPRVWVVPRQLRRDLIFSVHDSPIGEHQGLEDTYKTVRLLGWWPGMQDHVRDYCRSCLFCIPRNLIGG
ELKVIESPWPLRSTAPWSSLQIEVVGPVTVSEEGHKHVLIVADANTRWVEAFPLKPYTHVAVAQVLLQHV
FARWGVPIRLEAAQGPQFARHVLVSCGLALGAQVTTLSRALQFPCLMSSEAYWEFKRALKEFIFLYGKKW
AASLPLLHLAFRASTTEATPFQVLTGGEMKLMEPVWWEMSRANIEGLKMDAFLLQLMRELLDLHWRVAEK
ASEKAENRRFKRESQENEWSVGDQVLLLSLPRNGSSAKWMGPFYIGDRLSLSLYRVWGFPVPDKLGCVYP
SSLMKAFPKHDTPLSLDVEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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