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Report for CCDS24638.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24638.1 Public Mus musculus 11 Zfp879 23 108 98 CCDS HistoryNCBI Gene:214779Re-query CCDS DB by CCDS ID:24638.1Re-query CCDS DB by GeneID:214779See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24638.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049625.1 ENSMUSP00000061782.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049625.1Link to Ensembl Protein Viewer:ENSMUSP00000061782.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000049625Re-query CCDS DB by Protein ID:ENSMUSP00000061782
Original member Current member EBI ENSMUST00000109134.7 ENSMUSP00000104762.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109134.7Link to Ensembl Protein Viewer:ENSMUSP00000104762.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109134Re-query CCDS DB by Protein ID:ENSMUSP00000104762
Original member Current member NCBI NM_173387.3 NP_775563.1 Accepted alive Link to Nucleotide Sequence:NM_173387.3Link to Protein Sequence:NP_775563.1Re-query CCDS DB by Nucleotide ID:NM_173387Re-query CCDS DB by Protein ID:NP_775563Link to BLAST:NP_775563.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775563.1 563 Q8BI99 563 100% 0 0

Chromosomal Locations for CCDS 24638.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 50832536 50833971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50837910 50838005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50838410 50838536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50840526 50840558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGACCACGAGGTTGCTGCCAGCCCAGGTTCAGGAGCCTGTGACGTTCAGGGATGTGGCCGTGTCCTTCA
GCCAGGATGAGTGGTTGCACCTGGACCCTGCTCAGAGAACCTTGTACCGAGAGGTGATGCTGGAGAACTA
CAGCAACCTGGTCTCGCTGGGGATCCTGTTTTCCAAGCCAAAGGTCATCGCTCAGTTAGAACAAGCAGAA
GACTTCCCGATGGTGGAAAGTGGGATGTTTCAAGGTGTGTACCTCGGATGGAAGAGCTTGTTTGAGCCCA
TAGTTTCCAAAGAAGAAAATAAGAAAGTCTTGAAAAACCAGAGAGTGGATAAATTTTTTAACTTCATATT
GGGAAAAACGTGTGTAAATGAGGAACAGTTAGAGGAGCAACCAGGCAATAAGAAAAACCCTTTCAGCGAG
ATGCTGCTTTCTGTCAGAAGAGGCTGTAGACAAGAGCGAGGCTTTCCAGGGGTCGGACTCGTGAGAAATC
CCGGCATAAAGCTCCCATTTCGTAGGAAACCTGGAGTTGCCGCCGGAGGGGGAAAGCCCCACTTACAGCA
GTACTCAGTTCTGTTCAAACAACTGGGATTCAACCGAGCCCGCCAGCTTTGTAAATGCAACATCTGTGGG
AAAGTCTTCTTCCACAGTTCCTCCCTGAGCAAGCATCAGAGGACTCACACTGGAGAGAAGCTCTACAAAT
GTCAGGGCTGTCGGAAAGCTTTCAGCCAACGCTCATCCCTGGCACAGCACCTGAGAGTCCATACTGGGGA
AAAGCCGTACCTCTGTAGTGACTGTGGGAAGGCCTTCAGCTTCACCACCTCTCTCATTGGGCATCAGAGG
ATGCACACTGGAGAGAGACCCTATGAATGTAAGGAATGTGGCAAGACCTTCAAAGGCAGCTCCTCCCTTC
ATAATCACCAACGGATCCACACTGGAGAAAAGCCTTATAAGTGTAACGAGTGTGGGAGAGCCTTTAGCCA
GTGCTCATCTCTGATTCAGCACCATAGGATTCACACTGGGGAGAAACCATATGAATGCAGCCAGTGTGGG
AAGGCCTTTACATCAATATCACGGCTGAGCAGACACCACCGCGTCCATACCGGAGAGAAGCCCTTTCACT
GTAATGTGTGTGGCAAAGTGTTCAGTTACCACTCGGCCTTGACCATCCATCAGAGAACTCACACTGGAGA
GAAACCATATGCATGCAAGGAATGTGGGAAAGCCTTCAGCCAAAGCTCAGCACTTACCCAACATCAAAGA
ATCCACACTGGAGAAAAGCCGTACAAGTGTGCCGAATGCGGAAAGGCCTTTTCCTGGCTCTCACGGCTTA
ACATCCACCACAGGATCCACACGGGGGAGAAACCGTATCACTGTAAAGAGTGTGGGAAAGCCTTCAGTTC
CCACTCTGCGGTCAATACGCACAGAAAGATCCACACTGGTGAGAAACCTTATAAATGCAGTGACTGTGAA
AAAGCCTTCAATCAAAGCTCGGCCCTTATTCAGCATCAGAGAATCCACACCGGAGAGAAGCCGTTTAACT
GTAAAGTTTGTGGGAAAGCCTTCCGACAGAGTTCCTCGCTTATGACACATATGAGGATCCACACAGGAGA
AAGGCCGTACAGATGCGAAGCTTGCGGGAAAGCGTTCAGTCAGAGCTCATCTCTTGCCAACCACCAGAAG
ACACATTACTGA

Translation (563 aa):
MTTRLLPAQVQEPVTFRDVAVSFSQDEWLHLDPAQRTLYREVMLENYSNLVSLGILFSKPKVIAQLEQAE
DFPMVESGMFQGVYLGWKSLFEPIVSKEENKKVLKNQRVDKFFNFILGKTCVNEEQLEEQPGNKKNPFSE
MLLSVRRGCRQERGFPGVGLVRNPGIKLPFRRKPGVAAGGGKPHLQQYSVLFKQLGFNRARQLCKCNICG
KVFFHSSSLSKHQRTHTGEKLYKCQGCRKAFSQRSSLAQHLRVHTGEKPYLCSDCGKAFSFTTSLIGHQR
MHTGERPYECKECGKTFKGSSSLHNHQRIHTGEKPYKCNECGRAFSQCSSLIQHHRIHTGEKPYECSQCG
KAFTSISRLSRHHRVHTGEKPFHCNVCGKVFSYHSALTIHQRTHTGEKPYACKECGKAFSQSSALTQHQR
IHTGEKPYKCAECGKAFSWLSRLNIHHRIHTGEKPYHCKECGKAFSSHSAVNTHRKIHTGEKPYKCSDCE
KAFNQSSALIQHQRIHTGEKPFNCKVCGKAFRQSSSLMTHMRIHTGERPYRCEACGKAFSQSSSLANHQK
THY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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