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Report for CCDS19016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19016.1 Public Mus musculus 4 Prxl2b 23 108 98 CCDS HistoryNCBI Gene:66469Re-query CCDS DB by CCDS ID:19016.1Re-query CCDS DB by GeneID:66469See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030935.9 ENSMUSP00000030935.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030935.9Link to Ensembl Protein Viewer:ENSMUSP00000030935.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030935Re-query CCDS DB by Protein ID:ENSMUSP00000030935
Original member NCBI NM_025582.3 NP_079858.2 Updated not alive Link to Nucleotide Sequence:NM_025582.3Link to Protein Sequence:NP_079858.2Re-query CCDS DB by Nucleotide ID:NM_025582Re-query CCDS DB by Protein ID:NP_079858
Current member NCBI NM_025582.4 NP_079858.2 Accepted alive Link to Nucleotide Sequence:NM_025582.4Link to Protein Sequence:NP_079858.2Re-query CCDS DB by Nucleotide ID:NM_025582Re-query CCDS DB by Protein ID:NP_079858Link to BLAST:NP_079858.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079858.2 201 Q9DB60 201 100% 0 0

Chromosomal Locations for CCDS 19016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154896571 154896597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154897040 154897158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154897349 154897424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154897506 154897569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154898128 154898179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154898476 154898680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154898943 154899005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGAATGTGGTGGACCTTGGTCGCGTAGGAGCGTGTGTCTTGAAACATGCAGTGACTGGGGAGGCTGTGG
AG
CTGCGGAGCCTATGGCAGGAGAAAGCTTGTGTGGTGGCCGGTCTGCGACGCTTCGGCTGCATGGTGTG
C
CGCTGGATCGCCCAGGACCTCAGCAACCTCCGGAGCATCCTGGACCAACACGATGTGCGCCTGGTGGGC
GTG
GGGCCTGAGGCCCTGGGCCTGCAGGAGTTTCTGGATGGTGGTTACTTCTCAGGAGAACTCTACCTTG
AT
GAGAGCAAGCAAATCTATAAGGAGCTGGGCTTCAAGCGGTACAACAGCTTAAGCATCCTACCAGCTGC
C
CTGGGAAAACCTGTTCGTGATGTAGCCTCCAAGGCTAAAGCTGTTGGTATCCAGGGGAACCTGTCTGGT
GAC
CTGCTGCAAAGTGGAGGGCTGCTGGTGGTCAGCAAGGGTGGCGACAAGGTACTGTTGCACTTCATCC
AG
AAGTCCCCGGGTGACTATGTTCCCCAGGAGAACATCCTGCAGGCCTTGGGTATCTCTGCAGAGGTTTG
C
TCCAGCAAGCCACCCCAGTGTGATGAAGAGGTGTGTGGGAGGTGA


Translation (201 aa):
MNVVDLGRVGACVLKHAVTGEAVELRSLWQEKACVVAGLRRFGCMVCRWIAQDLSNLRSILDQHDVRLVG
V
GPEALGLQEFLDGGYFSG
ELYLDESKQIYKELGFKRYNSLSILPAALGKPVRDVASKAKAVGIQGNLSG
D
LLQSGGLLVVSK
GGDKVLLHFIQKSPGDYVPQENILQALGISAEVCSSKPPQCDEEVCGR



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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