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Report for CCDS17300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17300.1 Public Mus musculus 3 Ndufb5 23 108 98 CCDS HistoryNCBI Gene:66046Re-query CCDS DB by CCDS ID:17300.1Re-query CCDS DB by GeneID:66046See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17300.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000127477.7 ENSMUSP00000114963.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127477.7Link to Ensembl Protein Viewer:ENSMUSP00000114963.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000127477Re-query CCDS DB by Protein ID:ENSMUSP00000114963
Original member Current member NCBI NM_025316.2 NP_079592.2 Accepted alive Link to Nucleotide Sequence:NM_025316.2Link to Protein Sequence:NP_079592.2Re-query CCDS DB by Nucleotide ID:NM_025316Re-query CCDS DB by Protein ID:NP_079592Link to BLAST:NP_079592.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079592.2 189 Q9CQH3 189 100% 0 0

Chromosomal Locations for CCDS 17300.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 32737082 32737205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32744854 32744942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32746448 32746514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32747728 32747789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32748461 32748567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32751029 32751149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGGCGGCCATGAGCCTGCTGCAGCGGGCTTCGGTCTCCGCGCTGACAGCGCTGTCTTGCCGCCGCGCTG
GTCCTAGACTCGGAGTCGGAAGTTTTCTCACGCGGAGCTTTCCGAAGACTGTCGCTCCTGTGCGGCACAG
TGGGGACCATGGCAAGAGACTGTTTGTCGTCAAGCCTTCTTTATACTATGACGCTCGCTTCTTGAGGTTA
ATGAAATTCTACCTTATGTTGACTGGGATCCCAGTTATAATTGGCATAACACTGGTGAACATATTTATTG
GTGAAGCCGAGCTTGCAGAAATCCCAGAAGGCTACATCCCTGAACACTGGGAGTATTACAAGCATCCGAT
ATCAAGATGGATCGCCCGGAATTTCTATGATGGCCCTGAAAAGAACTACGAGAAAACCCTGGCTATCCTC
CAGATTGAATCTGAAAAGGCTGAGTTACGGTTAAAGGAGCAGGAAGTTCGAAGGCTGATGCGTGCCCGAG
GTGATGGACCCTGGTATCAATTTCCAACCCCTGAAAAGGAGTTCATTGATCATTCTCCAAAGGCAACTCC
TGACAACTGA

Translation (189 aa):
MAAMSLLQRASVSALTALSCRRAGPRLGVGSFLTRSFPKTVAPVRHSGDHGKRLFVVKPSLYYDARFLRL
MKFYLMLTGIPVIIGITLVNIFIGEAELAEIPEGYIPEHWEYYKHPISRWIARNFYDGPEKNYEKTLAIL
QIESEKAELRLKEQEVRRLMRARGDGPWYQFPTPEKEFIDHSPKATPDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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