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Report for CCDS16525.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16525.1 Public Mus musculus 2 Or4k40 23 108 98 CCDS HistoryNCBI Gene:277562Re-query CCDS DB by CCDS ID:16525.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16525.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099617.1 ENSMUSP00000097212.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099617.1Link to Ensembl Protein Viewer:ENSMUSP00000097212.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099617Re-query CCDS DB by Protein ID:ENSMUSP00000097212
Original member Current member EBI ENSMUST00000184954.3 ENSMUSP00000144852.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184954.3Link to Ensembl Protein Viewer:ENSMUSP00000144852.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000184954Re-query CCDS DB by Protein ID:ENSMUSP00000144852
Original member Current member EBI ENSMUST00000213210.1 ENSMUSP00000148932.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213210.1Link to Ensembl Protein Viewer:ENSMUSP00000148932.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213210Re-query CCDS DB by Protein ID:ENSMUSP00000148932
Original member Current member NCBI NM_207254.1 NP_997137.1 Accepted alive Link to Nucleotide Sequence:NM_207254.1Link to Protein Sequence:NP_997137.1Re-query CCDS DB by Nucleotide ID:NM_207254Re-query CCDS DB by Protein ID:NP_997137Link to BLAST:NP_997137.1

Chromosomal Locations for CCDS 16525.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 111420032 111420949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGAAGACTCTAATCATACTGTGGCTTCTGAGTTTATTTTTCAGGGACTGTGTTCCTCAAGGCAACTTG
AGATCTTCCTCTTACTGCCATTTTCCATCCTCTACCTGATGGCTGTGGTAGGCAACCTGTTTGTTGTGAT
ATTGATCATCATTGATCATCATCTCCATTCTCCCATGTACTTCTTGTTAGCTAATCTATCATTTATTGAC
TTCTGCCTTTGCTCAGTAACCACCCCCAAACTGACTATAGATCTCCTAAAAGAAAATAAAACCATTTCCT
TTGTAGGGTGTATGAGCCAGATCGTCTGTGTGCACTTCTTTGCAGGAGGTGAGATGGTACTTCTTGTAAC
AATGGCCTATGACCGGTATGTGGCCATCTGCAGGCCACTCCACTACAGCAGCATCATGGACAGACAGAAG
TGCATCTGGTTCCTTGTGATTCCATGGATTGTTGGATTTGTGCATGCCATTAGTCAGATGCTCTTGATTT
TGGATCTACCTTTCTGTGGACCTAGAGTGATAGACAGCTTTTTCTGTGATATTCCTTTGGTGATGAAATT
AGCCTGCATGAATACTGATACTCTGGAAATCCTAATAAATGCTGACAGTGGCATTTTAGCAACAACTTGT
TTCATCCTCTTGCTTGTATCTTATACTTACATTCTATTAACTGTTCAACATCGCTCTAAAGATGGCTCAT
CAAAAGCCCTATCTACATGCACATCCCATATCATAGTGGTTCTGCTGTTCTTTGGGCCCATCATTTTCAT
CTATCTGTGGCCAGTTAGCATCACCTGGGTTGACAAGTTTCTGGCTGTATTTTACTCAGTCATCACACCT
CTCCTGAATCCAGCCATCTACACACTGAGAAATAAAGATATTAAAAATGCCATAAAGAAGCTGATAAGTC
ACAAATGA

Translation (305 aa):
MEDSNHTVASEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFID
FCLCSVTTPKLTIDLLKENKTISFVGCMSQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQK
CIWFLVIPWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTC
FILLLVSYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITP
LLNPAIYTLRNKDIKNAIKKLISHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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