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Report for CCDS23086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23086.1 Public Mus musculus 9 Sc5d 23 108 98 CCDS HistoryNCBI Gene:235293Re-query CCDS DB by CCDS ID:23086.1Re-query CCDS DB by GeneID:235293See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23086.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052725.14 ENSMUSP00000057354.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052725.14Link to Ensembl Protein Viewer:ENSMUSP00000057354.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000052725Re-query CCDS DB by Protein ID:ENSMUSP00000057354
Original member Current member EBI ENSMUST00000169609.1 ENSMUSP00000130438.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169609.1Link to Ensembl Protein Viewer:ENSMUSP00000130438.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169609Re-query CCDS DB by Protein ID:ENSMUSP00000130438
Original member Current member NCBI NM_172769.2 NP_766357.1 Accepted alive Link to Nucleotide Sequence:NM_172769.2Link to Protein Sequence:NP_766357.1Re-query CCDS DB by Nucleotide ID:NM_172769Re-query CCDS DB by Protein ID:NP_766357Link to BLAST:NP_766357.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766357.1 299 O88822 299 100% 0 0

Chromosomal Locations for CCDS 23086.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 42255342 42255797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 42256107 42256207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 42258581 42258713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 42259682 42259891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGGACCTGGTTCTCAGTGCCGCCGATTACTACTTCTTCACTCCGTATGTATATCCAGCCACGTGGCCCG
AGGACAACATCATCCGACAAACTATTAGCCTCCTGATTGTCACAAACCTGGGTGCTTACATTCTCTACTT
CTTCTGTGCAACCCTCAGCTATTATTTTGTCTATGATCATTCCTTAATGAAACACCCACAGTTTTTAAAG
AACCAAGTCTCGCGTGAGATCGTGTTCACTGTCAAGTCTTTGCCTTGGATCAGCATCCCCACCGTCTCAC
TGTTCCTGCTGGAGCTGAGGGGTTACAGCAAACTCTACGATGACATCGGAGACTTTCCAAATGGCTGGAT
TCATCTCATGGTTAGCGTCGTATCCTTCCTCTTTTTCACAGACATGTTGATCTACTGGATTCATAGGGGC
CTGCACCACAGACTGGTCTACAAGCGCATACATAAACCACATCATATTTGGAAGATCCCCACGCCGTTTG
CAAGTCATGCTTTTCACCCTGTGGACGGCTTCCTTCAGAGTCTGCCTTACCATATATACCCCTTTGTCTT
TCCACTGCACAAGGTGGTCTACTTAGGTTTATATGTCTTGGTTAATGTCTGGACAATTTCTATTCATGAT
GGTGATTTTCGGGTTCCCCAGATCTTAAGGCCATTTATTAACGGGTCAGCTCACCACACAGACCACCACA
TGTTCTTTGACTATAACTATGGACAGTATTTCACATTGTGGGATAGAATTGGAGGCTCTTTTAAACATCC
TTCCTCTTTTGAAGGGAAAGGACCACATAGTTACGTGAAGAACATGACAGAAAAAGAATCTAACAGCTTT
GCAGAAAACGGCTGTAAAGGCAAAAAAGTAGGCAATGGAGAGTTTACAAAGAATAAGTAG

Translation (299 aa):
MDLVLSAADYYFFTPYVYPATWPEDNIIRQTISLLIVTNLGAYILYFFCATLSYYFVYDHSLMKHPQFLK
NQVSREIVFTVKSLPWISIPTVSLFLLELRGYSKLYDDIGDFPNGWIHLMVSVVSFLFFTDMLIYWIHRG
LHHRLVYKRIHKPHHIWKIPTPFASHAFHPVDGFLQSLPYHIYPFVFPLHKVVYLGLYVLVNVWTISIHD
GDFRVPQILRPFINGSAHHTDHHMFFDYNYGQYFTLWDRIGGSFKHPSSFEGKGPHSYVKNMTEKESNSF
AENGCKGKKVGNGEFTKNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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