NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35536.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35536.1 Public Mus musculus 1 Imp4 23 108 98 CCDS HistoryNCBI Gene:27993Re-query CCDS DB by CCDS ID:35536.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35536.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027303.13 ENSMUSP00000027303.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027303.13Link to Ensembl Protein Viewer:ENSMUSP00000027303.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027303Re-query CCDS DB by Protein ID:ENSMUSP00000027303
Original member NCBI NM_178601.3 NP_848716.2 Updated not alive Link to Nucleotide Sequence:NM_178601.3Link to Protein Sequence:NP_848716.2Re-query CCDS DB by Nucleotide ID:NM_178601Re-query CCDS DB by Protein ID:NP_848716
Current member NCBI NM_178601.4 NP_848716.2 Accepted alive Link to Nucleotide Sequence:NM_178601.4Link to Protein Sequence:NP_848716.2Re-query CCDS DB by Nucleotide ID:NM_178601Re-query CCDS DB by Protein ID:NP_848716Link to BLAST:NP_848716.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848716.2 291 Q8VHZ7 291 100% 0 0

Chromosomal Locations for CCDS 35536.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 34439925 34439927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34440041 34440149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34442910 34442993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34443378 34443487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34443563 34443695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34443769 34443923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34443997 34444091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34444196 34444269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34444358 34444470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGCTCCGTCGGGAGGCTCGCCTGCGCCGCGAGTACCTGTACCGCAAAGCCCGGGAGGAGGCGCAGCGAT
CCGTTCAGGAGAAGAAGGAGCGAGTCAAGCGTGCTCTAGAAGAAAACCAGCTGATTCCCACCGAGTTACG
CCGGGAGGCTCTAGCCTTACAGGGGTCCTTGGAGTTCGATGATGCTGGTGGAGAAGGTGTAACCAGCCAT
GTAGATGATGAATATCGATGGGCCGGGGTTGAGGATCCTAAGGTCATGATCACTACCTCCAGAGACCCTA
GTTCTCGCCTGAAAATGTTTGCAAAGGAACTGAAGCTGGTGTTCCCAGGTGCCCAGCGCATGAACCGAGG
TCGGCATGAGGTTGGAGCACTAGTGAGAGCTTGCAAAGCCAACGGGGTCACCGACCTGTTGGTGGTCCAT
GAGCATCGAGGCACACCCGTGGGGCTCATTGTCAGCCATCTGCCCTTCGGTCCTACTGCCTATTTCACAC
TGTGTAACGTGGTCATGCGGCACGACATCCCTGACCTGGGCACCATGTCAGAAGCCAAGCCCCACCTCAT
CACTCATGGCTTTTCCTCACGGCTGGGCAAGCGGGTGTCGGACATCCTTCGTTACCTATTCCCCGTGCCA
AAAGACGACAGCCATCGGGTCATCACCTTTGCAAACCAGGATGACTACATTTCATTCCGGCACCATGTCT
ACAAGAAGACAGACCACCGCAATGTGGAGCTGACTGAGGTCGGGCCTCGATTTGAGCTCAAGTTGTATAT
GATTCGCCTGGGCACACTGGAGCAGGAGGCCACCGCAGATGTAGAGTGGCGCTGGCACCCCTACACCAAC
ACCGCCCGCAAGAGGGTCTTCCTGAGTGCCGAGTGA

Translation (291 aa):
MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGEGVTSH
VDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVH
EHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVP
KDDSHRVITFANQDDYISFRHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTN
TARKRVFLSAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH