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Report for CCDS20238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20238.1 Public Mus musculus 6 Usp39 23 108 98 CCDS HistoryNCBI Gene:28035Re-query CCDS DB by CCDS ID:20238.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20238.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070345.4 ENSMUSP00000064515.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070345.4Link to Ensembl Protein Viewer:ENSMUSP00000064515.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000070345Re-query CCDS DB by Protein ID:ENSMUSP00000064515
Original member NCBI NM_138592.4 NP_613058.1 Updated not alive Link to Nucleotide Sequence:NM_138592.4Link to Protein Sequence:NP_613058.1Re-query CCDS DB by Nucleotide ID:NM_138592Re-query CCDS DB by Protein ID:NP_613058
Current member NCBI NM_138592.5 NP_613058.1 Accepted alive Link to Nucleotide Sequence:NM_138592.5Link to Protein Sequence:NP_613058.1Re-query CCDS DB by Nucleotide ID:NM_138592Re-query CCDS DB by Protein ID:NP_613058Link to BLAST:NP_613058.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613058.1 564 Q3TIX9 564 100% 0 0

Chromosomal Locations for CCDS 20238.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72319192 72319239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72319740 72319826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72321256 72321391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72325646 72325788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72328518 72328706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72329450 72329517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72333110 72333187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72336260 72336485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72337702 72337854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72338393 72338529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72339967 72340061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72342899 72342968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72344885 72345149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGTCTAGCCGGTCCAAGCGGCAGTCCCATGGTTCCACCCGCGGGAAGCGTGAGTCCGAGTCTCGTGGCA
GCTCGGGTCGCATCAAGAAGGAGCGAGACCGTGAGAAGGAGCCCGAGGCGGCGAGCTCCCGGGGTAGCCC
GGTCCGCGTGAAGCGGGAGGCCGAGCCGGCTGCGCGAGAGGTCCCGGCGCCCGCGCTCCCGGTCGTGCGG
GTGAAGCGTGAGCGCGAGGCCGATGAAGACTCGGAGCCCGAGCGGGAGGTGCGAGCAAAGAATGGCCGAG
TGGATTCTGAAGACCGGAGGAGTCGTCACTGCCCGTACTTGGATACCATTAATAGGAGTGTGCTGGACTT
CGACTTTGAGAAACTCTGCTCCATTTCTCTCTCGCACATCAACGCATACGCCTGTCTGGTGTGTGGCAAG
TACTTTCAAGGCCGGGGCTTAAAGTCTCATGCCTACATCCACAGTGTCCAGTTCAGCCACCATGTCTTCC
TCAACCTCCACACTCTCAAGTTTTACTGCCTTCCTGACAACTATGAAATCATTGATTCCTCGCTGGAGGA
TATCACGTATGTGTTGAAGCCTACTTTCACAAAGCAGCAAATTGCAAACTTGGATAAGCAAGCCAAATTG
TCCCGGGCATATGATGGCACCACTTACCTGCCAGGGATCGTGGGACTGAACAACATAAAAGCCAACGACT
ATGCAAATGCTGTGCTGCAGGCTCTATCTAATGTCCCTCCTCTTCGGAACTACTTCCTGGAGGAAGACAA
TTACAAGAACATCAAGCGTCCTCCGGGGGACATCATGTTCTTGTTGGTTCAGCGTTTTGGAGAGCTGATG
AGAAAGCTCTGGAACCCCCGAAACTTCAAGGCGCATGTCTCTCCTCATGAGATGCTTCAGGCTGTCGTAC
TTTGCAGCAAGAAGACTTTCCAAATTACCAAACAAGGGGATGGAGTTGACTTCCTGTCTTGGTTTCTGAA
TGCTCTGCACTCTGCTCTGGGAGGCACCAAGAAGAAGAAAAAGACTATTGTGAATGATGTTTTCCAGGGA
TCAATGAGAATTTTCACCAAAAAGCTTCCTCATCCTGATCTGCCAGCGGAAGAGAAAGAGCAGCTGCTCC
ACAATGATGAGTACCAAGAGACGATGGTAGAGTCCACGTTCATGTACCTGACGCTGGACCTTCCCACGGC
CCCGCTCTATAAGGATGAGAAGGAGCAGCTCATCATCCCCCAGGTGCCTCTCTTCAACATCCTGGCCAAG
TTCAACGGCATCACGGAGAAGGAATACAAGACTTATAAGGAGAACTTCCTGAAACGCTTCCAGCTCACCA
AGCTGCCTCCGTATCTAATCTTTTGCATCAAGAGATTTACTAAGAACAACTTCTTTGTGGAGAAGAATCC
AACAATTGTCAACTTCCCTATCACAAATGTGGATCTGAGAGAATACTTATCTGAAGAAGTCCAAGCCGTC
CACAAGAACACCACCTATGATCTCATCGCCAACATCGTGCATGATGGCAAGCCCTCTGAGGGCTCCTACA
GGATCCACGTGCTTCATCATGGGACTGGCAAGTGGTATGAATTACAAGACCTCCAGGTGACAGACATTCT
GCCCCAGATGATCACACTGTCTGAGGCGTACATTCAGATTTGGAAGAGGCGGGACAATGATGAAACCAAC
CAGCAGGGGGCTTGA

Translation (564 aa):
MSSRSKRQSHGSTRGKRESESRGSSGRIKKERDREKEPEAASSRGSPVRVKREAEPAAREVPAPALPVVR
VKREREADEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGK
YFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKL
SRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELM
RKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVNDVFQG
SMRIFTKKLPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAK
FNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLSEEVQAV
HKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRRDNDETN
QQGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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