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Report for CCDS51004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51004.1 Public Mus musculus 3 Lix1l 23 108 98 CCDS HistoryNCBI Gene:280411Re-query CCDS DB by CCDS ID:51004.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51004.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062058.4 ENSMUSP00000057623.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062058.4Link to Ensembl Protein Viewer:ENSMUSP00000057623.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000062058Re-query CCDS DB by Protein ID:ENSMUSP00000057623
Original member Current member NCBI NM_001163170.1 NP_001156642.1 Accepted alive Link to Nucleotide Sequence:NM_001163170.1Link to Protein Sequence:NP_001156642.1Re-query CCDS DB by Nucleotide ID:NM_001163170Re-query CCDS DB by Protein ID:NP_001156642Link to BLAST:NP_001156642.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156642.1 337 Q8BQ89 337 99.7033% 0 1

Chromosomal Locations for CCDS 51004.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96601182 96601473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96614392 96614555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96618601 96618741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96621309 96621404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96622143 96622220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96623664 96623906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGAGACGATGCGAGCACAGCGGCTGCAGCCCGGTGTAGGCGTCGGTGGGAGAGGCACTTTGCGAGCGC
TGCGGCCAGGGGTGACCGGGGCCCCGACTAGCGCCGCCACACCCCCCGTGGGCCCGCCGCCCGCCCCGCC
GCCCCCCGCCCCGCCCCCGCCTCCGCTGCTTCTGGCTGGGGCCCCCGGGCTGCCCCTGCCCCCCGGCGCC
GCGGGTAGCCCTGCGGTGCTGCGCGAGGCTGTGGAGGCGGTGGTGAGGAGCTTCGCCAAGCACACGCAGG
GCTACGGTCGAGTGAATGTGGTGGAGGCCCTTCAGGAATTCTGGCAGATGAAACAGTCTCGGGGCGCTGA
CTTGAAGAACGGGGCTCTGGTGGTGTACGAGATGGTCCCCTCCAACAGCCCTCCCTACGTCTGCTATGTC
ACTCTGCCTGGGGGGAGCTGCTTCGGGAGTTTCCAGTTTTGTCCCACAAAAGCTGAGGCCCGGCGAAGTG
CTGCAAAGATTGCATTAATGAACTCTGTGTTTAATGAGCATCCATCCCGAAGAATTACTGATGAGTTTAT
TGAGAAGAGTGTCTCAGAGGCCCTGGCATCTTTCAATGGTAACAGAGAGGAAGCTGACAACCCAAATACG
GGGATTGGTGCCTTCCGATTCATGTTGGAATCTAACAAGGGCAAGTCAATGCTGGAGTTCCAGGAGCTGA
TGACAGTTTTTCAGCTGCTGCACTGGAATGGCAGCCTTAAGGCCATGAGGGAAAGACAGTGCTCTCGACA
GGAGGTGTTGGCTCATTATTCACATCGGGCCCTGGATGATGATATTCGCCACCAAATGGCTTTGGACTGG
GTGAGCCGGGAGCAGAGTGTGCCAGGGGCACTGTCAAGAGAGCTGGCTTCCACTGAACGGGAACTCGATG
AAGCCCGGCTGGCGGGCAAGGAGCTGCGCTTCCACAAGGAGAAGAAAGATATTCTCATGCTGGCTGCTGG
GCAGTTGGGCAATATGCATTCTTCCAGCTGCTAA

Translation (337 aa):
METMRAQRLQPGVGVGGRGTLRALRPGVTGAPTSAATPPVGPPPAPPPPAPPPPPLLLAGAPGLPLPPGA
AGSPAVLREAVEAVVRSFAKHTQGYGRVNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYV
TLPGGSCFGSFQFCPTKAEARRSAAKIALMNSVFNEHPSRRITDEFIEKSVSEALASFNGNREEADNPNT
GIGAFRFMLESNKGKSMLEFQELMTVFQLLHWNGSLKAMRERQCSRQEVLAHYSHRALDDDIRHQMALDW
VSREQSVPGALSRELASTERELDEARLAGKELRFHKEKKDILMLAAGQLGNMHSSSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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