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Report for CCDS14343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14343.1 Public Homo sapiens X SSX7 24 110 108 CCDS HistoryNCBI Gene:280658Re-query CCDS DB by CCDS ID:14343.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14343.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298181.6 ENSP00000298181.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298181.6Link to Ensembl Protein Viewer:ENSP00000298181.5Re-query CCDS DB by Nucleotide ID:ENST00000298181Re-query CCDS DB by Protein ID:ENSP00000298181
Original member Current member NCBI NM_173358.2 NP_775494.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173358.2Link to Protein Sequence:NP_775494.1Re-query CCDS DB by Nucleotide ID:NM_173358Re-query CCDS DB by Protein ID:NP_775494Link to BLAST:NP_775494.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775494.1 188 Q7RTT5 188 100% 0 0

Chromosomal Locations for CCDS 14343.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 52645443 52645543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52648261 52648396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52650353 52650402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52652252 52652347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52652870 52652984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52653404 52653472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGAACGGAGACGACGCCTTTGCAAGGAGACCTAGGGCTGGTGCTCAAATACCAGAGAAGATCCAAAAGT
CCTTCGATGATATTGCCAAATACTTCTCTAAGAAAGAGTGGGAAAAGATGAAATCCTTGGAGAAAATCAG
CTATGTGTATATGAAGAGAAAGTATGAGGCCATGACTAAACTAGGCTTCAAGGCCACCCTCCCACCTTTC
ATGCATAATACAGGGGCCACAGACCTCCAGGGGAATGATTTTGATAATGACCGTAACCAAGGGAATCAGG
TTGAACGTCCTCAGATGACTTTTTGCAGGCTCCAGAGAATCTTCCCGAAGATCATGCCCAAGAAGCCAGC
AGAGGAAGGAAATGATTCGAAGGGAGTGCCAGAAGCATCTGGCTCACAGAACGATGGGAAACACCTGTGC
CCTCCAGGAAAACCAAGTACCTCTGAGAAGATTAACAAGACATCCGGACCCAAAAGGGGGAAACATGCCT
GGACCCACAGACTGCGTGAGAGAAAGCAGCTGGTGATTTATGAAGAGATCAGCGACCCTGAAGAAGACGA
CGAGTAA

Translation (188 aa):
MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTKLGFKATLPPF
MHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEGNDSKGVPEASGSQNDGKHLC
PPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEISDPEEDDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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