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Report for CCDS19636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19636.1 Public Mus musculus 5 Adam1b 23 108 98 CCDS HistoryNCBI Gene:280667Re-query CCDS DB by CCDS ID:19636.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19636.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079368.4 ENSMUSP00000078343.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079368.4Link to Ensembl Protein Viewer:ENSMUSP00000078343.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079368Re-query CCDS DB by Protein ID:ENSMUSP00000078343
Original member Current member NCBI NM_172125.3 NP_742123.2 Accepted alive Link to Nucleotide Sequence:NM_172125.3Link to Protein Sequence:NP_742123.2Re-query CCDS DB by Nucleotide ID:NM_172125Re-query CCDS DB by Protein ID:NP_742123Link to BLAST:NP_742123.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742123.2 806 Q8R534 806 100% 0 0

Chromosomal Locations for CCDS 19636.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 121500560 121502980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2421 nt):
ATGGAGCGACTAAAGCTGGGGAAAATCCCAGAGCACTGGTGTATCAGGCTGGTGGCCATGTTGCTCTTGG
CAATAATTTTTCTCCCGAGCACGTTCTGTGACATTGGATCTGTATATAATTCTTCCTATGAAACTGTCAT
CCCTGAGAGACTGCCAGGCAAGGGGGGGAAAGACCCTGGAGGGAAGGTGTCCTACATGCTATTGATGCAA
GGCCAAAAGCAGCTGCTTCACCTCGAGGTAAAGGGACACTACCCTGAGAATAACTTCCCAGTCTACAGTT
ACCACAATGGCATCCTGAGGCAAGAAATGCCTCTCCTCTCCCAGGACTGCCACTATGAAGGCTACATGGA
AGGGGTGCCAGGCTCCTTTGTTTCTGTCAACATCTGTTCAGGCCTCAGGGGGGTCTTGATTAAAGAGGAA
ACATCCTATGGCATTGAGCCCATGCTCTCTTCCAAAAACTTTGAACATGTCCTCTACACCATGGAGCATC
AGCCTGTGGTCTCCTGCAGTGTCACTCCCAAAGACAGCCCTGGGGACACCAGCCATCCACCAAGGAGCAG
GAAGCCCGATGACCTACTGGTTCTGACTGACTGGTGGTCACACACCAAGTATGTGGAGATGTTTGTGGTG
GTCAACCACCAGCGGTTCCAGATGTGGGGCAGTAACATCAACGAGACGGTCCAGGCAGTAATGGACATCA
TTGCTCTGGCCAACAGCTTCACTAGGGGGATAAACACAGAGGTGGTGCTGGTGGGCCTGGAAATCTGGAC
AGAGGGGGACCCGATAGAGGTCCCAGTGGACCTGCAGACCACACTCAGGAATTTCAACTTCTGGAGACAG
GAGAAACTCGTGGGCCGGGTCAGGCACGATGTGGCACACTTGATCGTCGGGCATCGCCCAGGAGAGAACG
AGGGCCAGGCGTTTCTCCGTGGTGCCTGTTCGGGTGAGTTTGCGGCGGCCGTGGAGGCCTTCCATCATGA
AGATGTCCTCCTGTTCGCGGCTCTCATGGCCCACGAGCTCGGGCACAACCTGGGTATCCAGCACGACCAC
CCGACCTGCACCTGTGGTCCCAAGCACTTCTGCCTCATGGGTGAGAAGATCGGTAAGGACAGTGGCTTCA
GCAACTGCAGCTCTGACCACTTCCTCCGTTTCCTCCACGACCACAGAGGGGTGTGCCTGCTTGATGAGCC
TGGGCGCCAGAGCCGCATGCGCAGAGCTGCCAATTGTGGGAATGGTGTGGTGGAGGACTTGGAGCAGTGT
GACTGTGGCAGTGACTGTGATAAAAGCCAGTGTTGTGATGAAAATTGTAAACTGAAGGGCAACTCAGTGT
GCAGCACTGAACTTTGCTGTTTTAAATGTAACTTTAAAAAGGAAGGAGATGTTTGCCGTCCTGCTGACGG
ACCATGTGACCTGGAAGAATACTGCAATGGGACCTCTGCAGCATGTCCCAGTGACAGGAAAGCCCAGGAC
GGCTCTAAGTGCCACGAATCCTTCTTGTGCTTTAATGGTCAGTGCATGGACCCTACCTTTCAGTGCTCTC
GTATTTTTGGGCATGGTTCAAGGTCTGCCTCCGATTATTGCTACACCTCTCTGAACTCGAGAGGAGACCA
GTTTGGAAACTGTGGCTCCTCCTCTCAATTTCCAAAAAAGTATACCAAGTGTTCAGATAAAAATGTAATG
TGTGGGAAACTTATATGTACAGAGGTGGCCTTCCTGCCACAAATCCAACCGAACAACTTGCTGCTCCAGG
TCCCTGAGACCGAGGACTGGTGCTGGAGTGTAGCTGTGTTTGACATGAGAGATTCCCTCCATGAGGAATA
CGTGAAGGACAACACTTACTGTGGCAAAGATAAAGTCTGTAAAAATTCCATTTGTGAGGACTTCACTCCA
TTCTCATTTCCCTGTAGTCCAAGCAAACAATGCAACAAGCACGGGGTGTGCAATGACCTGGGGAACTGCC
ACTGCTCCTTCGGCTTTGCACCTCCCGACTGCAAAGAGGAAGGCACTGGGGGCAGTGTGGACAGTGGCCC
TGCTGTTAATCTGTCAAATGACAGCAGTCCAGGGCCGAACTCCACCCAATCCAGCACAGAGGAGCTGATC
CTTAACTTAAAGCTGATCGTCCTGGCTGTCATTCTGGTGCTCATGATACTCTTAATAATCATATGCATCA
TAAGTGCCTACACCAAGTCAGAGACCGCTTCCGAAGCAGGGCCTTCAGAGCTAGAGGAGCTTCCAGAAGG
GGAGAAGGAAGAGCAGGAGGAGGTCCTACCAGAAGAGGCTAAAGGGGAGGAGGAGGAGTTGGAGTATGGG
AAGGAAGAAGCAGAAGAGCAAGGAGCAGTAGAAGAGGAAGGAGCAGAAGAGGCAAACGAAGAAGCAGCAG
CAGAAAAGAAAGACGAAGATGAAGAAGAGGGAGAGGAATAA

Translation (806 aa):
MERLKLGKIPEHWCIRLVAMLLLAIIFLPSTFCDIGSVYNSSYETVIPERLPGKGGKDPGGKVSYMLLMQ
GQKQLLHLEVKGHYPENNFPVYSYHNGILRQEMPLLSQDCHYEGYMEGVPGSFVSVNICSGLRGVLIKEE
TSYGIEPMLSSKNFEHVLYTMEHQPVVSCSVTPKDSPGDTSHPPRSRKPDDLLVLTDWWSHTKYVEMFVV
VNHQRFQMWGSNINETVQAVMDIIALANSFTRGINTEVVLVGLEIWTEGDPIEVPVDLQTTLRNFNFWRQ
EKLVGRVRHDVAHLIVGHRPGENEGQAFLRGACSGEFAAAVEAFHHEDVLLFAALMAHELGHNLGIQHDH
PTCTCGPKHFCLMGEKIGKDSGFSNCSSDHFLRFLHDHRGVCLLDEPGRQSRMRRAANCGNGVVEDLEQC
DCGSDCDKSQCCDENCKLKGNSVCSTELCCFKCNFKKEGDVCRPADGPCDLEEYCNGTSAACPSDRKAQD
GSKCHESFLCFNGQCMDPTFQCSRIFGHGSRSASDYCYTSLNSRGDQFGNCGSSSQFPKKYTKCSDKNVM
CGKLICTEVAFLPQIQPNNLLLQVPETEDWCWSVAVFDMRDSLHEEYVKDNTYCGKDKVCKNSICEDFTP
FSFPCSPSKQCNKHGVCNDLGNCHCSFGFAPPDCKEEGTGGSVDSGPAVNLSNDSSPGPNSTQSSTEELI
LNLKLIVLAVILVLMILLIIICIISAYTKSETASEAGPSELEELPEGEKEEQEEVLPEEAKGEEEELEYG
KEEAEEQGAVEEEGAEEANEEAAAEKKDEDEEEGEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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