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Report for CCDS16719.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16719.1 Public Mus musculus 2 Ttl 23 108 98 CCDS HistoryNCBI Gene:69737Re-query CCDS DB by CCDS ID:16719.1Re-query CCDS DB by GeneID:69737See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16719.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035812.13 ENSMUSP00000046883.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035812.13Link to Ensembl Protein Viewer:ENSMUSP00000046883.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035812Re-query CCDS DB by Protein ID:ENSMUSP00000046883
Original member Current member NCBI NM_027192.2 NP_081468.1 Accepted alive Link to Nucleotide Sequence:NM_027192.2Link to Protein Sequence:NP_081468.1Re-query CCDS DB by Nucleotide ID:NM_027192Re-query CCDS DB by Protein ID:NP_081468Link to BLAST:NP_081468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081468.1 377 P38585 377 100% 0 0

Chromosomal Locations for CCDS 16719.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 129066147 129066303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129068855 129068933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129075856 129076088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129081210 129081345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129081974 129082243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129088994 129089137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129092941 129093055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGTACACCTTCGTGGTGCGCGACGAGAATAGCAGCGTCTACGCCGAGGTCTCCCGGCTGCTGCTGGCCA
CCGGCTACTGGAAGAGGCTACGGCGAGACAACCCCAGGTTCAACCTGATGCTGGGGGAGAGGAACCGACT
GCCCTTCGGGAGACTAGGTCACGAGCCTGGGCTGGCACAGCTGGTGAATTACTACCGGGGGGCGGACAAA
CTGTGCCGCAAAGCTTCCTTAGTAAAGCTAGTCAAGACCAGTCCGGAACTGTCTGAGTCCTGCTCATGGT
TCCCCGAGTCGTATGTGATTTATCCAACTAACCTCAAGACGCCAGTCGCTCCGGCGCAGAATGGCATCCA
ACTTCCGGTCAGTAACTCCAGGACAGATGAGAGAGAATTCTTCTTGGCTTCTTATAACAGAAAGAAAGAG
GACGGGGAGGGCAACGTTTGGATTGCAAAGTCATCAGCTGGTGCCAAAGGTGAGGGCATCCTCATCTCCT
CAGAGGCATCGGAGCTTCTGGATTTCATCGACAGCCAGGGCCAAGTGCACGTGATCCAGAAATACCTCGA
GCGCCCTCTGCTCCTCGAGCCCGGCCACCGCAAGTTTGACATTCGAAGCTGGGTCCTGGTTGACCATCAG
TATAACATCTACCTCTATAGAGAGGGTGTGCTTCGAACTGCTTCAGAACCATATCATGTTGATAATTTCC
AAGATAAGACCTGCCATCTGACCAATCACTGCATTCAGAAAGAGTACTCAAAGAACTATGGGAAATACGA
AGAAGGGAATGAAATGTTCTTCGAAGAGTTCAATCAGTACCTAACCAGCGCTCTGAACATCACCTTAGAA
AGTAGCATTTTGCTGCAAATCAAACACATAATAAGGAGCTGCCTCATGAGTGTGGAGCCCGCCATCAGCA
CCAAACACCTCCCTTACCAGAGCTTCCAGCTCCTCGGCTTTGACTTCATGGTGGACGAGGAGCTGAAGGT
CTGGCTCATTGAAGTCAACGGCGCCCCAGCGTGTGCCCAGAAACTCTATGCAGAACTGTGCCAGGGCATC
GTGGACATAGCCATATCCAGTGTCTTCCCACCCCCGGACACGGAGCAGGTGCCGCAGCAGCCGGCTGCGT
TCGTCAAGCTGTGA

Translation (377 aa):
MYTFVVRDENSSVYAEVSRLLLATGYWKRLRRDNPRFNLMLGERNRLPFGRLGHEPGLAQLVNYYRGADK
LCRKASLVKLVKTSPELSESCSWFPESYVIYPTNLKTPVAPAQNGIQLPVSNSRTDEREFFLASYNRKKE
DGEGNVWIAKSSAGAKGEGILISSEASELLDFIDSQGQVHVIQKYLERPLLLEPGHRKFDIRSWVLVDHQ
YNIYLYREGVLRTASEPYHVDNFQDKTCHLTNHCIQKEYSKNYGKYEEGNEMFFEEFNQYLTSALNITLE
SSILLQIKHIIRSCLMSVEPAISTKHLPYQSFQLLGFDFMVDEELKVWLIEVNGAPACAQKLYAELCQGI
VDIAISSVFPPPDTEQVPQQPAAFVKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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