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Report for CCDS25244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25244.1 Public Mus musculus 11 Car10 23 108 98 CCDS HistoryNCBI Gene:72605Re-query CCDS DB by CCDS ID:25244.1Re-query CCDS DB by GeneID:72605See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042943.12 ENSMUSP00000035585.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042943.12Link to Ensembl Protein Viewer:ENSMUSP00000035585.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042943Re-query CCDS DB by Protein ID:ENSMUSP00000035585
Original member Current member EBI ENSMUST00000107863.3 ENSMUSP00000103495.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107863.3Link to Ensembl Protein Viewer:ENSMUSP00000103495.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107863Re-query CCDS DB by Protein ID:ENSMUSP00000103495
Original member Current member NCBI NM_001361707.1 NP_001348636.1 Accepted alive Link to Nucleotide Sequence:NM_001361707.1Link to Protein Sequence:NP_001348636.1Re-query CCDS DB by Nucleotide ID:NM_001361707Re-query CCDS DB by Protein ID:NP_001348636Link to BLAST:NP_001348636.1
Original member Current member NCBI NM_001361708.1 NP_001348637.1 Accepted alive Link to Nucleotide Sequence:NM_001361708.1Link to Protein Sequence:NP_001348637.1Re-query CCDS DB by Nucleotide ID:NM_001361708Re-query CCDS DB by Protein ID:NP_001348637Link to BLAST:NP_001348637.1
Original member Current member NCBI NM_028296.3 NP_082572.1 Accepted alive Link to Nucleotide Sequence:NM_028296.3Link to Protein Sequence:NP_082572.1Re-query CCDS DB by Nucleotide ID:NM_028296Re-query CCDS DB by Protein ID:NP_082572Link to BLAST:NP_082572.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348636.1 328 P61215 328 100% 0 0
NP_001348637.1 328 P61215 328 100% 0 0
NP_082572.1 328 P61215 328 100% 0 0

Chromosomal Locations for CCDS 25244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 93100226 93100286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93185082 93185156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93304505 93304647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93490492 93490677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93578666 93578761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93582948 93583020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93597113 93597267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93599224 93599398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93600316 93600338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGAAATAGTCTGGGAGGTGCTTTTTCTTCTTCAAGCCAATTTCATCGTCTGCATATCAGCTCAACAGA
ATTCACCAAAAATCCATGAAGGCTGGTGGGCATACAAGGAGGTGGTCCAGGGAAGCTTTGTTCCAGTTCC
TTCTTTCTGGGGATTGGTGAACTCAGCTTGGAATCTTTGCTCTGTGGGGAAGCGTCAGTCCCCTGTCAAC
ATAGAAACCAGTCACATGATCTTCGACCCCTTTCTGACACCTCTTCGCATCAACACTGGGGGCAGGAAGG
TCAGTGGGACCATGTACAACACTGGAAGGCATGTCTCCCTCCGCCTGGACAAAGAGCACTTGGTCAATAT
TTCAGGAGGGCCCATGACATACAGTCACCGCCTGGAAGAAATCCGGCTACACTTTGGGAGTGAGGACAGC
CAAGGGTCTGAGCACCTCCTCAATGGACAGGCCTTCTCCGGGGAGGTACAACTCATCCACTATAACCACG
AGCTATACACAAATGTCACAGAAGCTGCGAAGAGCCCGAATGGATTGGTGGTAGTTTCTATATTTATAAA
AGTTTCTGATTCATCAAACCCATTTCTTAATCGAATGCTCAACAGAGATACTATCACAAGAATAACATAT
AAAAATGATGCATACTTACTACAGGGACTTAATATAGAGGAACTGTATCCAGAGACCTCTAGTTTCATCA
CTTATGATGGGTCGATGACTATCCCGCCCTGCTATGAGACAGCAAGTTGGATAATAATGAACAAGCCTGT
GTACATAACCAGGATGCAGATGCATTCCCTACGCCTCCTCAGCCAGAATCAGCCATCGCAGATCTTTCTG
AGCATGAGTGACAACTTCAGGCCTGTCCAGCCACTCAATAATCGCTGTATTCGCACCAACATCAACTTCA
GTTTACAGGGGAAGGACTGTCCTAACAACAGGGCCCAGAAGCTACAGTACAGAGTAAACGAATGGCTCCT
CAAGTAG

Translation (328 aa):
MEIVWEVLFLLQANFIVCISAQQNSPKIHEGWWAYKEVVQGSFVPVPSFWGLVNSAWNLCSVGKRQSPVN
IETSHMIFDPFLTPLRINTGGRKVSGTMYNTGRHVSLRLDKEHLVNISGGPMTYSHRLEEIRLHFGSEDS
QGSEHLLNGQAFSGEVQLIHYNHELYTNVTEAAKSPNGLVVVSIFIKVSDSSNPFLNRMLNRDTITRITY
KNDAYLLQGLNIEELYPETSSFITYDGSMTIPPCYETASWIIMNKPVYITRMQMHSLRLLSQNQPSQIFL
SMSDNFRPVQPLNNRCIRTNINFSLQGKDCPNNRAQKLQYRVNEWLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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