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Report for CCDS28472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28472.1 Public Mus musculus 17 Prss27 23 108 98 CCDS HistoryNCBI Gene:213171Re-query CCDS DB by CCDS ID:28472.1Re-query CCDS DB by GeneID:213171See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28472.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059482.5 ENSMUSP00000056483.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059482.5Link to Ensembl Protein Viewer:ENSMUSP00000056483.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000059482Re-query CCDS DB by Protein ID:ENSMUSP00000056483
Original member Current member NCBI NM_175440.4 NP_780649.1 Accepted alive Link to Nucleotide Sequence:NM_175440.4Link to Protein Sequence:NP_780649.1Re-query CCDS DB by Nucleotide ID:NM_175440Re-query CCDS DB by Protein ID:NP_780649Link to BLAST:NP_780649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780649.1 328 Q8BJR6 328 100% 0 0

Chromosomal Locations for CCDS 28472.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24038307 24038361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24042054 24042080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24042802 24042964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24044260 24044531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24044859 24045028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24045552 24045851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGAGGCAGCCCCACATCGCTGCCCTGCTGCTGCTGCCGCTGCTGCTCAGATCTGGGACTGAAGGGGCCA
GGACTCTGAGAGCCTGTGGGCATCCAAAGATGTTCAACCGGATGGTGGGCGGGGAGAACGCCTTAGAAGG
TGAGTGGCCCTGGCAGGTCAGCATCCAGCGCAACGGAATCCACTTCTGTGGGGGCAGTCTCATCGCACCA
ACATGGGTCCTCACTGCTGCACACTGCTTCTCCAACACTTCGGACATATCCATATACCAGGTCCTGCTGG
GGGCACTGAAGCTGCAGCAGCCAGGACCACACGCCTTGTATGTCCCCGTGAAGCAGGTGAAAAGCAATCC
TCAGTACCAAGGCATGGCCTCCAGTGCCGACGTGGCTCTGGTGGAGCTGCAGGGGCCGGTGACCTTCACC
AATTACATCCTTCCTGTGTGCCTTCCTGATCCCTCGGTCATCTTTGAGTCGGGCATGAACTGCTGGGTCA
CTGGCTGGGGCAGCCCCAGTGAACAAGACCGACTACCCAACCCACGGGTCCTGCAGAAACTTGCTGTGCC
CATCATTGACACGCCCAAGTGCAACCTGCTGTACAACAAAGATGTTGAGTCTGACTTCCAGCTCAAAACC
ATCAAGGATGACATGCTGTGTGCAGGCTTCGCAGAGGGCAAGAAGGACGCCTGTAAGGGTGACTCTGGAG
GCCCACTGGTGTGCCTTGTGGACCAGTCGTGGGTGCAGGCTGGGGTGATCAGCTGGGGAGAGGGTTGTGC
CCGTCGGAATCGCCCAGGTGTCTACATCCGTGTGACTTCTCATCACAAATGGATCCACCAAATCATCCCA
GAACTGCAGTTTCAGGGGAGAGCAGGCACCCAGCAGCAACAAAAAGACTCCCAAGGTCAGCAGCGCCTGG
CGGGGAACTCCGCCCCTTGCCTGGCTGCCCATGCAATGGTGCTGGCCCTGGGAGCACTGCTGCTCAGGAT
CGTCTAG

Translation (328 aa):
MRQPHIAALLLLPLLLRSGTEGARTLRACGHPKMFNRMVGGENALEGEWPWQVSIQRNGIHFCGGSLIAP
TWVLTAAHCFSNTSDISIYQVLLGALKLQQPGPHALYVPVKQVKSNPQYQGMASSADVALVELQGPVTFT
NYILPVCLPDPSVIFESGMNCWVTGWGSPSEQDRLPNPRVLQKLAVPIIDTPKCNLLYNKDVESDFQLKT
IKDDMLCAGFAEGKKDACKGDSGGPLVCLVDQSWVQAGVISWGEGCARRNRPGVYIRVTSHHKWIHQIIP
ELQFQGRAGTQQQQKDSQGQQRLAGNSAPCLAAHAMVLALGALLLRIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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