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Report for CCDS48353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48353.1 Public Mus musculus 1 Fcamr 23 108 98 CCDS HistoryNCBI Gene:64435Re-query CCDS DB by CCDS ID:48353.1Re-query CCDS DB by GeneID:64435See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48353.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112477.8 ENSMUSP00000108096.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112477.8Link to Ensembl Protein Viewer:ENSMUSP00000108096.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112477Re-query CCDS DB by Protein ID:ENSMUSP00000108096
Original member Current member NCBI NM_001170632.1 NP_001164103.1 Accepted alive Link to Nucleotide Sequence:NM_001170632.1Link to Protein Sequence:NP_001164103.1Re-query CCDS DB by Nucleotide ID:NM_001170632Re-query CCDS DB by Protein ID:NP_001164103Link to BLAST:NP_001164103.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164103.1 591 Q2TB54-2 591 100% 0 0

Chromosomal Locations for CCDS 48353.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 130800950 130800988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130803051 130803276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130804543 130804683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130811371 130811709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130812591 130813347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130813994 130814112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130814499 130814653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGGACCAAGGTGCCCCAGCTAAGCCCAGTGAACAAAAGCACCTCACTTGCCAGGACACGCAGTTCCCTG
GCCCTGCCTTTCGGGTAGAGCTACCCAGCTACTGGAGCAAACTGAGAATGCACAGCCAGAGTGCCGAGCC
CTGGACTCCCGACCACTCTCTCCAGCTTCTCACAAGCCTCCCTCTGGCCTCTTGTCTTTGGCTGCAGGTC
CCCAGCCTGAGAACGAGATGGGAAATACTTCTTCTCACACTCTGTCTGCTCCATGGTTCATCCATGACCC
CTCCACACAGAAGGTCACATTCCAGATGGCTGCAGGCTGGCTCTCCTCAGTTCAGGACCCATCTCTACAA
TGTGGAAGCACACACAGCTCCCACGCCCCTTTGCTGCTGGAAGAACTCCCTTTCAGGTACAAATGCATTG
AGAGGCCCGCGACTGGTGACTGGGAACACTGGGGGAGCTGTCACCATCCATTGCCATTACGCCCCCTCCT
CAGTCAACAGGCATCAAAGAAAATACTGGTGCCGCCTGGGGTCTCCATTGTGGATCTGTCACACTGTCGT
GTCCACCAACCAATACACTCACCCTGACTACCGTGGGCGCGCGGCTCTCACTGACATTCCACAGAGCGGT
TTGTTTGTGGTGAGGCTGCTCCGACTGTCCCTGGGTGACGTGGGACTTTACCGCTGTGGCATAGGAGACC
GAAACGACATGCTATTCTTCAGCGTGAATCTGACTGTGTCTGCAGGTCCATCCAACACCACCTATGCAGC
AGCACCAGCTTCCGGTGAGCCCACCACAGCATCTCCTGGAGCAGCATCCTCAGCAGGCAACGGATGGACC
TCAGGCATCACCCAGATCCTAGAAGGCTCAGGCTCAGAATGGGACAGAACAGTTCCAACCACAGGTACCA
GCAAAACTACATCTTCAGCCAATGGAAGACAAACCTTAAGAACAGCCAGGACAATGGTTCCGGGGACAGG
CAGCAGAGAGGAGGGCTCTATCAGGGCAGCAGTCCCCACTCCAGAGGGTCCGTCTCCAAAATCAAGAAGC
ATGTCCAGCACAACACAGGGTGTTTGGCTGTGGAGCACCAGGAACTCAGTAACACCCAGTGTTACCACGA
GTGAAGGAAGGAGGCAAGGCACAACCCCAGAGACTGATGGGCCACGAGATGAAACAGACGTCAGGGTGTC
TCCAGAAGCACCCAGGAAGACCACAGGAACCACGAGGCCATCGGCCCTGATCTCAGAACATGTGACCTGG
GAAACTCTCCAAGACAAAACAGAGGTGTCTAAGCAACAAATGCTGCACTCCCTGGAGGAGTTATCACCAG
CTCCAAGTGCACAGACCTTAAATGCTACCTGTTTGGAAGTGGCATCCGAGGAAGGAAGGAGCATTGATGG
GAGTCTTGAAAACACTACAGAAGAAAGCAGCCCCCCAACACCAAGCCAGCTTTCAGTAGCAGGCCCTGTG
TGGGTTTCTGTCAAGGGGCCATCCATGAAGAGTGCTCTGATGGAAGGAGAAAGCCACACTCGGATCCTGA
CTCCAGTCTCCACTGTGCTGGCCCTGCTTCTAATTGCTGCTCTGATCCTATTGAAAAGGAGCCTTGGCAG
ACAGAGGACATCTCAGAAGAAAGAAAGGGTACCCAGGATCACTCTAATTCAGATGACACATTTCCTACCA
GATAAGCTCCCTGATGAGGGAAAGAACTTTCAACAGAGTAACCTTCTTCCTCCCCAAGCCAGCCTGACCG
TCCTGGAGAATGACCCAAGACCCTGA

Translation (591 aa):
MDQGAPAKPSEQKHLTCQDTQFPGPAFRVELPSYWSKLRMHSQSAEPWTPDHSLQLLTSLPLASCLWLQV
PSLRTRWEILLLTLCLLHGSSMTPPHRRSHSRWLQAGSPQFRTHLYNVEAHTAPTPLCCWKNSLSGTNAL
RGPRLVTGNTGGAVTIHCHYAPSSVNRHQRKYWCRLGSPLWICHTVVSTNQYTHPDYRGRAALTDIPQSG
LFVVRLLRLSLGDVGLYRCGIGDRNDMLFFSVNLTVSAGPSNTTYAAAPASGEPTTASPGAASSAGNGWT
SGITQILEGSGSEWDRTVPTTGTSKTTSSANGRQTLRTARTMVPGTGSREEGSIRAAVPTPEGPSPKSRS
MSSTTQGVWLWSTRNSVTPSVTTSEGRRQGTTPETDGPRDETDVRVSPEAPRKTTGTTRPSALISEHVTW
ETLQDKTEVSKQQMLHSLEELSPAPSAQTLNATCLEVASEEGRSIDGSLENTTEESSPPTPSQLSVAGPV
WVSVKGPSMKSALMEGESHTRILTPVSTVLALLLIAALILLKRSLGRQRTSQKKERVPRITLIQMTHFLP
DKLPDEGKNFQQSNLLPPQASLTVLENDPRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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