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Report for CCDS26372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26372.1 Public Mus musculus 13 Slc17a1 23 108 98 CCDS HistoryNCBI Gene:20504Re-query CCDS DB by CCDS ID:26372.1Re-query CCDS DB by GeneID:20504See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26372.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006785.7 ENSMUSP00000006785.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006785.7Link to Ensembl Protein Viewer:ENSMUSP00000006785.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000006785Re-query CCDS DB by Protein ID:ENSMUSP00000006785
Original member Current member EBI ENSMUST00000110413.7 ENSMUSP00000106043.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110413.7Link to Ensembl Protein Viewer:ENSMUSP00000106043.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110413Re-query CCDS DB by Protein ID:ENSMUSP00000106043
Original member Current member NCBI NM_001170638.1 NP_001164109.1 Accepted alive Link to Nucleotide Sequence:NM_001170638.1Link to Protein Sequence:NP_001164109.1Re-query CCDS DB by Nucleotide ID:NM_001170638Re-query CCDS DB by Protein ID:NP_001164109Link to BLAST:NP_001164109.1
Original member Current member NCBI NM_009198.3 NP_033224.3 Accepted alive Link to Nucleotide Sequence:NM_009198.3Link to Protein Sequence:NP_033224.3Re-query CCDS DB by Nucleotide ID:NM_009198Re-query CCDS DB by Protein ID:NP_033224Link to BLAST:NP_033224.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164109.1 465 Q61983 465 100% 0 0
NP_033224.3 465 Q61983 465 100% 0 0

Chromosomal Locations for CCDS 26372.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23872600 23872627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23874593 23874765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23875489 23875722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23875803 23875890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23876540 23876626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23878462 23878580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23878682 23878843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23880354 23880486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23880579 23880726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23887973 23888063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23892535 23892669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGAGAACCAGTGCCTCCCCAAGAAAGTTCCAGGGTTCTGTTCCTTCCGGTATGGACTGGCTATCCTTC
TGCACTTCTGTAACATTGCCATCATGGCCCAGAGAGTGTGCCTGAACCTCACCATGGTAGCCATGGTGAA
CAACACAGGGTCACCCCATTTATCTAACGAATCTGTAGTGGAGATGTTGGACAATGTAAAGAACCCTGTG
TATTCCTGGAGTCCTGATATCCAAGGGCTTATTCTCAGTTCTGTCTTCTTTGGTATGGTCGTGGTTCAGG
CTCCTGTCGGGTACCTATCTGGAATATACCCAATGAAGAGAATAATTGGGTCTTCACTGTTCCTCAGCTC
TTTGATGTCCTTGCTCCTCCCACCTGCTGCACAAGTCGGAGCTGCTTTAGTCATTGTGTGTCGAGTACTC
CAGGGAATAGCCCAGGGAACAGTGTCAACAGGCCAGCATGAAATATGGGTCAAATGGGCACCTCCCTTAG
AACGAGGCAGACTTACCTCTATGACTCTATCAGGGTTTGTAATGGGACCATTTATTGTCCTGCTTGTGAG
TGGCTTCATCTGTGATCTTCTGGGCTGGCCCATGGTCTTCTACATCTTTGGTATTGTTGGGTGTGTTCTG
AGTCTTTCCTGGTTCTTTCTATTCTTTGATGACCCCAAGGACCACCCGTATATGAGCAGCAGTGAGAAGG
ACTACATCATATCCTCCCTCATGCAACAGGCCAGCTCAGGCAGACAATCCCTGCCAATCAAAGCTATGCT
TAAATCTCTTCCACTCTGGGCCATTATCCTCAATAGCTTTGCTTTCATATGGTCGAACAGTCTCCTGGTT
ACATACACGCCGACATTTATCAGCACTGTGCTTCATGTTAATGTTAGAGAGAATGGACTGCTGTCCAGCC
TCCCCTATCTGCTTGCCTACATCTGTGGTATCCTAGCAGGTCAGATGTCAGACTTCTTCCTGACCAGGAA
GATTTTCAGCATAGTTACCGTCCGGAAACTCTTCACCACACTAGGGAGTTTCTGTCCCGTGATCTTCATC
ATGTGCTTGCTCTACCTGAGCTACAACTTCTACAGCACCGTCATTTTCCTGACACTTGCCAACTCAACAC
TTAGCTTTTCCTACTGCGGACAACTTATCAATGCCTTGGATATTGCTCCCAGATATTATGGATTTCTTAA
GGCAGTCACAGCTTTAATTGGAATGTTTGGGGGCCTGATTTCTTCAACTCTTGCTGGGTTGATTCTTAAT
CAGGATCCGGAATATGCTTGGCATAAAATTTTCTTCTTGATGGCAGGCATTAATGTGACATGCCTGGTTT
TCTATTTTCTATTTGCTAAAGGAGAAATTCAGGACTGGGCTAAAGAAATAAAAACCACACGACTGTGA

Translation (465 aa):
MENQCLPKKVPGFCSFRYGLAILLHFCNIAIMAQRVCLNLTMVAMVNNTGSPHLSNESVVEMLDNVKNPV
YSWSPDIQGLILSSVFFGMVVVQAPVGYLSGIYPMKRIIGSSLFLSSLMSLLLPPAAQVGAALVIVCRVL
QGIAQGTVSTGQHEIWVKWAPPLERGRLTSMTLSGFVMGPFIVLLVSGFICDLLGWPMVFYIFGIVGCVL
SLSWFFLFFDDPKDHPYMSSSEKDYIISSLMQQASSGRQSLPIKAMLKSLPLWAIILNSFAFIWSNSLLV
TYTPTFISTVLHVNVRENGLLSSLPYLLAYICGILAGQMSDFFLTRKIFSIVTVRKLFTTLGSFCPVIFI
MCLLYLSYNFYSTVIFLTLANSTLSFSYCGQLINALDIAPRYYGFLKAVTALIGMFGGLISSTLAGLILN
QDPEYAWHKIFFLMAGINVTCLVFYFLFAKGEIQDWAKEIKTTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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