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Report for CCDS47500.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47500.2 Public Homo sapiens 6 ZC3H12D 24 110 108 CCDS HistoryNCBI Gene:340152Re-query CCDS DB by CCDS ID:47500.2Re-query CCDS DB by GeneID:340152See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47500.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409806.8 ENSP00000386616.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409806.8Link to Ensembl Protein Viewer:ENSP00000386616.3Re-query CCDS DB by Nucleotide ID:ENST00000409806Re-query CCDS DB by Protein ID:ENSP00000386616
Original member Current member NCBI NM_207360.3 NP_997243.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207360.3Link to Protein Sequence:NP_997243.2Re-query CCDS DB by Nucleotide ID:NM_207360Re-query CCDS DB by Protein ID:NP_997243Link to BLAST:NP_997243.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997243.2 527 A2A288-1 527 100% 0 0

Chromosomal Locations for CCDS 47500.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 149450683 149451479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149452616 149452722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149456666 149456900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149461831 149461970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149474239 149474543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGGAGCACCCCAGCAAGATGGAATTCTTCCAGAAGCTGGGCTATGACCGGGAGGATGTGCTCCGGGTGT
TGGGCAAGCTGGGCGAGGGCGCCCTGGTCAACGACGTGCTGCAGGAGCTTATCCGCACGGGCAGCCGCCC
GGGTGCCCTGGAGCACCCGGCTGCACCCAGGCTAGTGCCTCGGGGCTCCTGTGGGGTCCCGGACTCTGCC
CAGCGTGGCCCGGGGACAGCCCTGGAAGAGGACTTCAGAACCCTGGCCAGTTCTCTGCGACCCATAGTGA
TTGATGGCAGCAACGTGGCGATGAGCCATGGAAATAAAGAAACCTTCTCTTGCCGGGGAATCAAGCTGGC
TGTTGACTGGTTCAGGGACAGAGGACACACCTACATCAAAGTTTTTGTTCCATCCTGGAGGAAGGACCCA
CCAAGAGCTGACACCCCTATCAGAGAGCAGCACGTGCTGGCGGAGCTGGAGCGGCAGGCGGTGCTGGTGT
ACACGCCGTCCCGCAAGGTGCACGGCAAGCGCCTGGTCTGCTACGACGACCGCTACATCGTGAAGGTGGC
CTACGAGCAGGACGGCGTCATCGTCTCCAACGACAACTACCGGGACCTGCAGAGCGAGAACCCCGAGTGG
AAGTGGTTCATCGAGCAGAGGCTGCTCATGTTCTCCTTCGTCAACGACCGGTTCATGCCGCCTGATGACC
CCCTGGGCCGCCATGGACCCTCCCTGAGCAACTTCCTGAGCAGGAAGCCGAAGCCCCCAGAGCCATCCTG
GCAGCATTGTCCTTATGGCAAGAAATGCACCTATGGCATCAAGTGCAAGTTCTACCACCCGGAGAGGCCG
CACCACGCGCAACTGGCGGTGGCCGACGAGCTCCGCGCCAAGACAGGGGCCCGGCCTGGCGCGGGCGCCG
AGGAGCAGCGGCCACCGAGAGCCCCGGGCGGCTCCGCAGGAGCCCGGGCGGCCCCCCGGGAACCATTTGC
GCACAGCCTCCCGCCGGCGCGGGGGTCCCCGGACCTGGCCGCCCTGCGAGGGAGCTTCTCTCGGCTGGCC
TTCAGCGACGACCTGGGGCCCCTGGGGCCGCCTCTCCCGGTCCCCGCCTGCAGCCTCACGCCCCGACTGG
GCGGGCCCGACTGGGTGTCCGCGGGCGGCCGGGTGCCAGGCCCGCTCAGCCTCCCTAGCCCGGAGAGCCA
GTTCTCCCCGGGCGACCTCCCGCCTCCGCCCGGCCTGCAGCTCCAGCCGCGGGGCGAACACCGCCCTAGG
GACCTGCACGGCGACTTGCTTTCCCCGCGCAGGCCACCCGACGACCCGTGGGCCCGTCCACCCCGCTCCG
ACCGCTTCCCTGGGCGCTCCGTCTGGGCGGAGCCGGCCTGGGGCGACGGCGCCACTGGGGGACTTTCAGT
GTACGCGACCGAGGACGACGAGGGGGACGCGCGCGCCCGGGCTCGCATCGCGCTCTACAGCGTCTTCCCG
CGTGACCAGGTGGACCGCGTGATGGCCGCGTTCCCGGAGCTCTCAGACCTCGCCAGGCTCATCCTCCTGG
TACAGAGATGCCAGAGCGCGGGGGCGCCCCTGGGCAAGCCCTAA

Translation (527 aa):
MEHPSKMEFFQKLGYDREDVLRVLGKLGEGALVNDVLQELIRTGSRPGALEHPAAPRLVPRGSCGVPDSA
QRGPGTALEEDFRTLASSLRPIVIDGSNVAMSHGNKETFSCRGIKLAVDWFRDRGHTYIKVFVPSWRKDP
PRADTPIREQHVLAELERQAVLVYTPSRKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDLQSENPEW
KWFIEQRLLMFSFVNDRFMPPDDPLGRHGPSLSNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERP
HHAQLAVADELRAKTGARPGAGAEEQRPPRAPGGSAGARAAPREPFAHSLPPARGSPDLAALRGSFSRLA
FSDDLGPLGPPLPVPACSLTPRLGGPDWVSAGGRVPGPLSLPSPESQFSPGDLPPPPGLQLQPRGEHRPR
DLHGDLLSPRRPPDDPWARPPRSDRFPGRSVWAEPAWGDGATGGLSVYATEDDEGDARARARIALYSVFP
RDQVDRVMAAFPELSDLARLILLVQRCQSAGAPLGKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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