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Report for CCDS39690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39690.1 Public Mus musculus 6 Slco1a4 23 108 98 CCDS HistoryNCBI Gene:28250Re-query CCDS DB by CCDS ID:39690.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39690.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032364.13 ENSMUSP00000032364.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032364.13Link to Ensembl Protein Viewer:ENSMUSP00000032364.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032364Re-query CCDS DB by Protein ID:ENSMUSP00000032364
Original member Current member EBI ENSMUST00000165990.7 ENSMUSP00000130746.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165990.7Link to Ensembl Protein Viewer:ENSMUSP00000130746.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165990Re-query CCDS DB by Protein ID:ENSMUSP00000130746
Original member NCBI NM_001355577.1 NP_001342506.1 Updated not alive Link to Nucleotide Sequence:NM_001355577.1Link to Protein Sequence:NP_001342506.1Re-query CCDS DB by Nucleotide ID:NM_001355577Re-query CCDS DB by Protein ID:NP_001342506
Current member NCBI NM_001355577.2 NP_001342506.1 Accepted alive Link to Nucleotide Sequence:NM_001355577.2Link to Protein Sequence:NP_001342506.1Re-query CCDS DB by Nucleotide ID:NM_001355577Re-query CCDS DB by Protein ID:NP_001342506Link to BLAST:NP_001342506.1
Original member NCBI NM_030687.2 NP_109612.1 Updated not alive Link to Nucleotide Sequence:NM_030687.2Link to Protein Sequence:NP_109612.1Re-query CCDS DB by Nucleotide ID:NM_030687Re-query CCDS DB by Protein ID:NP_109612
Current member NCBI NM_030687.3 NP_109612.1 Accepted alive Link to Nucleotide Sequence:NM_030687.3Link to Protein Sequence:NP_109612.1Re-query CCDS DB by Nucleotide ID:NM_030687Re-query CCDS DB by Protein ID:NP_109612Link to BLAST:NP_109612.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342506.1 670 Q9EP96-1 670 100% 0 0
NP_109612.1 670 Q9EP96-1 670 100% 0 0

Chromosomal Locations for CCDS 39690.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 141806961 141807180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141809282 141809399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141810450 141810514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141812674 141812846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141815449 141815614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141817718 141817913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141819440 141819604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141824979 141825200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141826242 141826340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141830704 141830850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141834621 141834727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141839528 141839660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141841258 141841399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141845409 141845468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGGGAAAATCTGAGAAAGAGGTTGCAACCCATGGGGTCAGATGCTTTTCCAAGATCAAGGCATTTCTGT
TGGCATTAACATGTGCATATGTATCCAAATCACTATCAGGAACTTACATGAATTCCATGCTCACTCAAAT
AGAGAGACAATTCGGTATCCCCACGTCTGTAGTTGGGCTTATCAATGGGAGCTTTGAGATAGGAAATCTT
CTGTTGATTATATTCGTGAGTTACTTCGGAACAAAACTGCACAGGCCTATCATGATTGGTGTAGGATGTG
CAGTTATGGGCCTGGGGTGTTTCTTAATATCGATACCTCATTTCCTCATGGGCAGATATGAATATGAAAC
AACAATTTTACCTACAAGCAACTTGTCCTCAAATAGCTTTGTGTGTACGGAAAACAGAACACAGACCTTA
AAGCCAACGCAAGACCCAACAGAGTGTGTGAAAGAAATGAAATCATTAATGTGGATATATGTACTGGTAG
GAAACATTATACGTGGAATGGGTGAAACTCCCATCATGCCCTTGGGTATTTCCTACATAGAAGATTTTGC
AAAATCTGAAAACTCTCCTTTATATATTGGGATTTTAGAAACAGGAATGACCATTGGCCCTTTGATTGGA
CTTCTGTTGGGATCTTCCTGTGCAAACATTTATGTAGACACTGGGTCTGTGAATACAGATGACCTGACCA
TAACTCCCACTGATACACGCTGGGTCGGTGCTTGGTGGATTGGCTTTTTGGTCTGTGCAGGAGTGAATAT
CCTGACCAGCATCCCCTTTTTCTTCTTTCCAAAAACACTCCTAAAGGAAGGATTACAGGATAATGGAGAT
GGAACTGAAAATGCCAAAGAGGAGAAGCACAGAGAAAAAATCAAGGAGGAAAACCGAGGAATCACTAAAG
ATTTCTTTCTGTTCATGAAGAGCCTCTCCTGCAATCCGATTTACATGATTTTCATCCTTATAAGTGTGAT
CCAGGTCAATGCCTTTATCAATTCATTTACCTTCATGCCTAAGTATCTGGAACAGCAATATGGAAAATCC
ACTGCTGAGATAGTCTTCCTCATGGGTCTTTACATGTTACCTCCAATATGCCTCGGATATTTAATTGGTG
GTTTGATTATGAAGAAGTTCAAGATTACTGTCAAGAAAGCTGCATACATAGGATTCTGGCTATCCCTGAC
TGAGTACCTTCTGTCTTTTGTTAGCTATATAATGACCTGTGACAATTTCCCAGTTGCTGGATTAACCACC
TCTTATGAAGGAGTTCAGCACCCTCTATATGTGGAGAATAATGTCCTTGCTGACTGCAACACAAAGTGTA
GCTGCTTAACGAACACATGGGACCCAGTGTGTGGAGACAATGGTCTATCATACATGTCAGCTTGCCTCGC
GGGCTGTGAGAAGTCTGTTGGAACTGGAACCAACATGGTGTTTCAAAATTGTAGCTGCATTCAGTCATCA
GGAAATGCATCTGCAGTCCTGGGCCTGTGTGACAAGGGTCCTGAGTGTGCTAACAAGCTGCAGTACTTTT
TAATCATATCAATAATTGGCTGTTTCATCTTCTCGCTGGGAGCCATACCTGGGTACATGGTTCTTCTGAG
GTGTATGAAGTCTGAAGAGAAGTCACTTGGAGTTGGATTACATACATTTTGCATGAGAATATTAGGTGGT
ATTCCAGCACCTATTTACTTTGGTGCTTTGATAGACAGAACCTGTTTACACTGGGGAACTCTAAAATGTG
GTGAGCCAGGGGCATGCAGGATGTATGATATAAATAGCTTCAGGCGCATTTACCTGGGGTTGCCTGCTGC
TCTAAGAGGAGCAAGCTTTCTCCCTGCACTCTTCATCCTAATCCTTATGAGGAAATTCCAATTCCCTGGG
GACATCGACTCTTCAGACACAGATCCTGCAGAAATGAAGCTCACTGCGAAGGAAAGCAAGTGCACAAATG
TGCACAGAAGTCCTACGATGCAGAATGATGGAGAACGGAAAACTAAGCTGTGA

Translation (670 aa):
MGKSEKEVATHGVRCFSKIKAFLLALTCAYVSKSLSGTYMNSMLTQIERQFGIPTSVVGLINGSFEIGNL
LLIIFVSYFGTKLHRPIMIGVGCAVMGLGCFLISIPHFLMGRYEYETTILPTSNLSSNSFVCTENRTQTL
KPTQDPTECVKEMKSLMWIYVLVGNIIRGMGETPIMPLGISYIEDFAKSENSPLYIGILETGMTIGPLIG
LLLGSSCANIYVDTGSVNTDDLTITPTDTRWVGAWWIGFLVCAGVNILTSIPFFFFPKTLLKEGLQDNGD
GTENAKEEKHREKIKEENRGITKDFFLFMKSLSCNPIYMIFILISVIQVNAFINSFTFMPKYLEQQYGKS
TAEIVFLMGLYMLPPICLGYLIGGLIMKKFKITVKKAAYIGFWLSLTEYLLSFVSYIMTCDNFPVAGLTT
SYEGVQHPLYVENNVLADCNTKCSCLTNTWDPVCGDNGLSYMSACLAGCEKSVGTGTNMVFQNCSCIQSS
GNASAVLGLCDKGPECANKLQYFLIISIIGCFIFSLGAIPGYMVLLRCMKSEEKSLGVGLHTFCMRILGG
IPAPIYFGALIDRTCLHWGTLKCGEPGACRMYDINSFRRIYLGLPAALRGASFLPALFILILMRKFQFPG
DIDSSDTDPAEMKLTAKESKCTNVHRSPTMQNDGERKTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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