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Report for CCDS51793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51793.1 Public Mus musculus 6 Vmn1r9 23 108 98 CCDS HistoryNCBI Gene:171203Re-query CCDS DB by CCDS ID:51793.1Re-query CCDS DB by GeneID:171203See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51793.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171186.1 ENSMUSP00000125762.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171186.1Link to Ensembl Protein Viewer:ENSMUSP00000125762.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171186Re-query CCDS DB by Protein ID:ENSMUSP00000125762
Original member Current member EBI ENSMUST00000228714.1 ENSMUSP00000153808.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228714.1Link to Ensembl Protein Viewer:ENSMUSP00000153808.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228714Re-query CCDS DB by Protein ID:ENSMUSP00000153808
Original member Current member EBI ENSMUST00000227399.1 ENSMUSP00000154215.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227399.1Link to Ensembl Protein Viewer:ENSMUSP00000154215.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227399Re-query CCDS DB by Protein ID:ENSMUSP00000154215
Original member Current member NCBI NM_134185.2 NP_598946.2 Accepted alive Link to Nucleotide Sequence:NM_134185.2Link to Protein Sequence:NP_598946.2Re-query CCDS DB by Nucleotide ID:NM_134185Re-query CCDS DB by Protein ID:NP_598946Link to BLAST:NP_598946.2

Chromosomal Locations for CCDS 51793.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57070942 57071841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGTCTTCATTTAAGAATGTTCTTTATTTCCAAGCTGGACTTGGAGTCCTAGCCAATATGGTTCTTCTTC
TTTTCTATATTTTTATAATCCTAGGTCACAGACCTAAGCCCACAGACCTGATCTCCTGTCAACTGACCTT
TGTTCACATAATAATGGTCCTCACTGGAGGGGATATTTTGCTTACAGACTTATTTGAGTTATTAAACATT
GAGAATGACTTAAAATGTAAGACAATTTTTTATATTAGCAGGGTGATGAGAGGCCTCTCTATCTGCACCA
CCTGCCTTCTGAGTGTGTTCCAGGCTGTCACTATCAGTCCCAGTACCTCTTTTTTGGCAAAATTTAAACA
AAAACTAAAAAAATACATGGTCTGTGTTTTCTTATGCATTTGGTCTTTCAATTTGGCCTTCAGTACTAAC
CGGATCTTTTATGTTGGTGGTTTTACTAATGTGAGTGAGACCAACCAGATGCAGGTCACTAAATCCTGCT
CACTCTTACCCATGAACATTATTATCAGGGGATTGATTTTTACAATATCAACCTCCAGAGATGTGTTTCT
TGTAGGAGTCATGCTGACCACAAGTGTATACATGGTCATTACCATGTTTAGGTATCACAGGCAGTGCAAG
TATCTTTATAGCATCAGCCACTTGAGAGAGTCCCCTGAGAAAAGGGCCACCCAGACCATCTTGCTGCTGG
TGTCTTTCTTTGTTGTCATGTACTGGGTGGACTTCATCATCTCATTCACCTCAGACATGATATGGATGTA
TGACCCACTCATCCTGACTGTTCAGAAGTTTATGATGAATGCCTATCCCACAATTACCCCTTTGGTACAA
ATCAGTTCTGATAACAGAATAATAATTATGCTGAAAAACCTGCAGTCAAAGCATCAATAG

Translation (299 aa):
MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNI
ENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPSTSFLAKFKQKLKKYMVCVFLCIWSFNLAFSTN
RIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGLIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCK
YLYSISHLRESPEKRATQTILLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMNAYPTITPLVQ
ISSDNRIIIMLKNLQSKHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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