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Report for CCDS17126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17126.1 Public Mus musculus 2 Cbln4 23 108 98 CCDS HistoryNCBI Gene:228942Re-query CCDS DB by CCDS ID:17126.1Re-query CCDS DB by GeneID:228942See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17126.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087950.3 ENSMUSP00000085263.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087950.3Link to Ensembl Protein Viewer:ENSMUSP00000085263.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087950Re-query CCDS DB by Protein ID:ENSMUSP00000085263
Original member Current member NCBI NM_175631.3 NP_783439.1 Accepted alive Link to Nucleotide Sequence:NM_175631.3Link to Protein Sequence:NP_783439.1Re-query CCDS DB by Nucleotide ID:NM_175631Re-query CCDS DB by Protein ID:NP_783439Link to BLAST:NP_783439.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783439.1 198 Q8BME9 198 100% 0 0

Chromosomal Locations for CCDS 17126.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 172037370 172037567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172038974 172039090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172042017 172042298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGGCTCCGCGCGCCGGGCGCTGTCCGTGGTACCAGCCGTTCTGCTGATTCTAGTGCTGCCTGTCTGGG
CACAGAATGACACGGAACCGATCGTTCTGGAGGGCAAGTGTCTGGTGGTGTGCGACTCGAACCCAGCTAC
AGACTCCAAGGGATCATCATCTTCCCCTCTGGGGATATCGGTCCGGGCAGCAAACTCCAAGGTGGCTTTT
TCGGCGGTTCGGAGCACCAACCACGAGCCATCTGAGATGAGCAACAAGACTCGCATCATTTACTTTGATC
AGATCCTGGTTAACGTGGGTAATTTTTTCACATTGGAATCTGTCTTTGTGGCACCGAGGAAAGGAATCTA
TAGTTTCAGTTTTCACGTAATTAAAGTCTACCAGAGCCAAACCATCCAGGTTAACTTGATGTTAAATGGA
AAACCAGTCATCTCTGCATTTGCTGGTGATAAAGATGTGACCCGTGAAGCCGCCACTAATGGAGTGCTCC
TGTACCTGGACAAAGAAGATAAGGTCTACCTAAAACTGGAGAAAGGTAACTTGCTCGGTGGCTGGCAGTA
TTCCACGTTTTCTGGCTTTCTGGTGTTTCCTCTATAG

Translation (198 aa):
MGSARRALSVVPAVLLILVLPVWAQNDTEPIVLEGKCLVVCDSNPATDSKGSSSSPLGISVRAANSKVAF
SAVRSTNHEPSEMSNKTRIIYFDQILVNVGNFFTLESVFVAPRKGIYSFSFHVIKVYQSQTIQVNLMLNG
KPVISAFAGDKDVTREAATNGVLLYLDKEDKVYLKLEKGNLLGGWQYSTFSGFLVFPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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