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Report for CCDS16388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16388.1 Public Mus musculus 2 Or4a76 23 108 98 CCDS HistoryNCBI Gene:257984Re-query CCDS DB by CCDS ID:16388.1Re-query CCDS DB by GeneID:257984See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16388.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099769.1 ENSMUSP00000097357.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099769.1Link to Ensembl Protein Viewer:ENSMUSP00000097357.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099769Re-query CCDS DB by Protein ID:ENSMUSP00000097357
Original member Current member EBI ENSMUST00000216124.2 ENSMUSP00000149072.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216124.2Link to Ensembl Protein Viewer:ENSMUSP00000149072.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216124Re-query CCDS DB by Protein ID:ENSMUSP00000149072
Original member Current member NCBI NM_001011796.2 NP_001011796.2 Accepted alive Link to Nucleotide Sequence:NM_001011796.2Link to Protein Sequence:NP_001011796.2Re-query CCDS DB by Nucleotide ID:NM_001011796Re-query CCDS DB by Protein ID:NP_001011796Link to BLAST:NP_001011796.2

Chromosomal Locations for CCDS 16388.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 89629940 89630896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGGCCAGAGCAACAATGTCACAGAATTTGTCCTGCTGGGCTTCACTCAGGATCCTGCTGGGCAAAAAG
CTTTATCTGTTATGTTTTCACTGATCTACATTGTGACAATGGTGGGCAACCTGCTCATCGTAGGGACAGT
GATTGCCAGCCCCTCCTTGGGCTCCCCAATGTACTTCTTCCTTGCCTCTCTGTCACTCATGGATGCTATT
TACTCCACTGCCATCACACCCAAGTTGATAGTAGACTTGCTCTGTGAGAAAAAGACCATCTCCTTCAGAG
CTTGTATAAGCCAGCTCTTTATAGATCATTTGTTTGGTGGGGTTGACATTGTCATTCTGCTGGCAATGGC
CTATGATCGCTATGTGGCCATCTGTAAGCCACTGCATTATTTGATCATCATGAATCGAAGGGTATGTATT
CTCTTCTTGGTGATGGCCTGGGCGGGAGGTCTTGCACATGCTTTGTTTCAAGTTCTCGCTGTATATAATT
TTCCATTCTGTGGTCCCAATATCATTGACCACTTTGGCTGTGACATATACCCACTATTACTACTTGCATG
TACTGATACATACTTCCTTGGCCTTTCTATCATTGGCAATAATGGGGCAATGTGCATAGTCATCTTCACT
CTCCTCCTACTCTCCTATGGGATAATCCTTAGATTTCTCAAGAATCACAGTCAGGAAGGGAGGCGCAAAG
CTCTGTCCACCTGTGGCTCCCATATCACTGTGGTTTTTCTCTTTTTTGTTCCATGTATTTTCATGTATGT
TAGACCTGTTTCTAGTTTTCCTATTGATAAATTCATCACTGTAATTTATACCATTGTTACTCCCATGTTG
AATCCTTTAATATATACTTTGAGAAATTCAGAAATGAAAAATTCTATGGAAAAGCTCCTGCAGAAAACAT
TAAGTCCAAGTAGAATACGGCTGTCTTCTTGCTGCTTATGTTACTAA

Translation (318 aa):
MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAI
YSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCI
LFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFT
LLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPML
NPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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