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Report for CCDS16210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16210.1 Public Mus musculus 2 Or5g29 23 108 98 CCDS HistoryNCBI Gene:258428Re-query CCDS DB by CCDS ID:16210.1Re-query CCDS DB by GeneID:258428See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052307.4 ENSMUSP00000059970.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052307.4Link to Ensembl Protein Viewer:ENSMUSP00000059970.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000052307Re-query CCDS DB by Protein ID:ENSMUSP00000059970
Original member Current member EBI ENSMUST00000215083.2 ENSMUSP00000150713.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215083.2Link to Ensembl Protein Viewer:ENSMUSP00000150713.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215083Re-query CCDS DB by Protein ID:ENSMUSP00000150713
Original member Current member NCBI NM_146436.2 NP_666647.2 Accepted alive Link to Nucleotide Sequence:NM_146436.2Link to Protein Sequence:NP_666647.2Re-query CCDS DB by Nucleotide ID:NM_146436Re-query CCDS DB by Protein ID:NP_666647Link to BLAST:NP_666647.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666647.2 314 Q8VF76 314 100% 0 0

Chromosomal Locations for CCDS 16210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 85590542 85591486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAAGAAAAGAATCAGACTATTGTAATGGAGTTTTTCTTCCTGGGCCTAACAGATCATCTCTATCAGA
AGATTGCACTTTTCATCACGATCCTCTTTGTTTATCTTGTCACACTGGGAGGCAACTTGGGCATGATCAC
TCTCATATGGGCAGACCCCAGGCTGCATACACCTATGTACTTTTTTCTCAGCCACTTGTCATTTGTTGAT
ATGTGCTCCTCTTCTTCCATAGCTCCTAAGATGCTCTGTGATATCTTTGCAGAGGAGAAAAGGATCTCTT
TCATGGGCTGTGCAGCACAGATGTGGTTCTTTGGTTTCTTTGTGGGAACTGAGTGTTTCCTGCTTGCTTC
CATGGCATATGATCGGTACACAGCCATTTGCAAGCCCTTACTGTATACTCTCCTTATGTCTCAGAGGGTA
TGTGTGCATCTGGTTGTAGGGCCATATGTCTTTGCTATTATAAACATCACAACTCATACAACCTTGGCTT
TTTGCTTACCGTTCTGTGGTTCAAATACCATCAACCATTTCTTCTGTGATGTCTCTCCACTTTTATCATT
GGCGTGTGCTGACTCTTGGGTTAATAAGGTTGTGCTTTTTGTTCTTTCTGGAGCCATAGGAGTGTTCAGT
GGTCTGATCATCATAGTCTCCTATGTCAGCATCTTGATGACAATTTTCAAGATTCAAACTGCTGATGGGA
AACAAAAAGCCTTCTCTACTTGTTCCTCTCACTTGTCAGCTGTCTCCATTCTGTATGGGACACTTTTCTT
TATTTATGTTCGACCCAGTGCAAGTTTTTCCTTAAACATCAACAAAATGATTTCTCTGTTTTATACTGTG
GTGATCCCTATGCTGAATCCCCTCATCTATAGCCTGAGGAACAAAGAAGTGAAAGGTGCATTCAGGAGAA
AGGTGCAAAAGAAACATTTTCCAGCAGGCAGGTGA

Translation (314 aa):
MEEKNQTIVMEFFFLGLTDHLYQKIALFITILFVYLVTLGGNLGMITLIWADPRLHTPMYFFLSHLSFVD
MCSSSSIAPKMLCDIFAEEKRISFMGCAAQMWFFGFFVGTECFLLASMAYDRYTAICKPLLYTLLMSQRV
CVHLVVGPYVFAIINITTHTTLAFCLPFCGSNTINHFFCDVSPLLSLACADSWVNKVVLFVLSGAIGVFS
GLIIIVSYVSILMTIFKIQTADGKQKAFSTCSSHLSAVSILYGTLFFIYVRPSASFSLNINKMISLFYTV
VIPMLNPLIYSLRNKEVKGAFRRKVQKKHFPAGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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