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Report for CCDS16263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16263.1 Public Mus musculus 2 Or8k38 23 108 98 CCDS HistoryNCBI Gene:258583Re-query CCDS DB by CCDS ID:16263.1Re-query CCDS DB by GeneID:258583See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16263.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099879.1 ENSMUSP00000097464.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099879.1Link to Ensembl Protein Viewer:ENSMUSP00000097464.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099879Re-query CCDS DB by Protein ID:ENSMUSP00000097464
Original member Current member EBI ENSMUST00000213279.1 ENSMUSP00000150258.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213279.1Link to Ensembl Protein Viewer:ENSMUSP00000150258.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213279Re-query CCDS DB by Protein ID:ENSMUSP00000150258
Original member Current member EBI ENSMUST00000214566.2 ENSMUSP00000150955.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214566.2Link to Ensembl Protein Viewer:ENSMUSP00000150955.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214566Re-query CCDS DB by Protein ID:ENSMUSP00000150955
Original member Current member NCBI NM_146590.2 NP_666801.2 Accepted alive Link to Nucleotide Sequence:NM_146590.2Link to Protein Sequence:NP_666801.2Re-query CCDS DB by Nucleotide ID:NM_146590Re-query CCDS DB by Protein ID:NP_666801Link to BLAST:NP_666801.2

Chromosomal Locations for CCDS 16263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86657515 86658456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGAGAAACAGAATCTCACAGTGCTGAGTGAATTCATTTTGAAAGGCATCACTGACCGTCCTGAGCTGC
AGGCCCCACTCTTTGGGCTGCTCTTCATTATCTATCTGATCTCAGCAGTGGGTAATTTAGGCATCATCAT
TATTACTAATGTGGACTCCAGTCTCCACACACCCATGTACTTTTTTCTCAAACATCTGGCTTTCACTGAT
CTTGGATATTCTACAGCCATTGGACCAAAAATGTTAGTTAATTTTGTTGCAGAGCATAATTCAGTCTCCT
ATTATCTTTGTGCTACACAGTTAGCTTGCTTTCTTCTTTTTATTACTTGTGAACTTTTTATTCTTTCTTC
AATGTCTTATGACCGTTACGTGGCTATATGTAACCCTCTTCTCTATACTGTCATCATGTCACAAAGAATA
TGTTGGGTACTTGTGGCGGTCCCATATATCTACAGTGTATTTGTATCTCTAATTGTCACAATAAGATTAT
TTACTTTATCCTTTTGTGGCTACAATATCATCAATCATTTTTTCTGTGATTGTATCCCATTAATATCTTT
GCTCTGTTCAAATACACATGAGGTTGAAGTGATAATTAGGTTCTTTGCAACATTTGATTTGATTTCCTCT
CTTCTGGTCGTCCTTCTGTCTTATCTGTTTATTCTCATAACTATTCTGAGGATGAAATCTGCTGCAGGCA
GATGCAAGGCTTTTTCAACCTGTGGGTCTCACCTCACTGTGGTCATTGTCTTCTATGGGACTTTGATATT
TATGTATGTGCAGCCCAAGTCCAGTCAAACATTTGAGACTGATAAAGTGTCTTCCATATTTTACACACTT
GTTATCCCAATGTTGAATCCCTTGATCTATACCTTGAGGAATAAAGATGTAAAAGATGCCATAGAAAGAA
CCTGGGAAAAGATAGTTACCAGTTTTTCTTAA

Translation (313 aa):
MEKQNLTVLSEFILKGITDRPELQAPLFGLLFIIYLISAVGNLGIIIITNVDSSLHTPMYFFLKHLAFTD
LGYSTAIGPKMLVNFVAEHNSVSYYLCATQLACFLLFITCELFILSSMSYDRYVAICNPLLYTVIMSQRI
CWVLVAVPYIYSVFVSLIVTIRLFTLSFCGYNIINHFFCDCIPLISLLCSNTHEVEVIIRFFATFDLISS
LLVVLLSYLFILITILRMKSAAGRCKAFSTCGSHLTVVIVFYGTLIFMYVQPKSSQTFETDKVSSIFYTL
VIPMLNPLIYTLRNKDVKDAIERTWEKIVTSFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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