NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21740.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21740.2 Public Mus musculus 7 Scube2 23 108 98 CCDS HistoryNCBI Gene:56788Re-query CCDS DB by CCDS ID:21740.2Re-query CCDS DB by GeneID:56788See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21740.2
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript data. The update results in a shorter protein that maintains the original reading frame.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21740.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106729.7 ENSMUSP00000102340.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106729.7Link to Ensembl Protein Viewer:ENSMUSP00000102340.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106729Re-query CCDS DB by Protein ID:ENSMUSP00000102340
Original member Current member NCBI NM_020052.2 NP_064436.2 Accepted alive Link to Nucleotide Sequence:NM_020052.2Link to Protein Sequence:NP_064436.2Re-query CCDS DB by Nucleotide ID:NM_020052Re-query CCDS DB by Protein ID:NP_064436Link to BLAST:NP_064436.2

Chromosomal Locations for CCDS 21740.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 109799253 109799405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109800574 109800653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109804608 109804760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109806043 109806240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109808409 109808570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109809078 109809245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109824765 109824971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109825319 109825474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109829035 109829139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109830797 109830880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109831128 109831244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109831667 109831789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109833009 109833125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109836994 109837116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109838080 109838196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109843180 109843269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109843877 109843993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109846923 109847048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109852434 109852568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109857521 109857646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109864105 109864227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109865460 109865586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2907 nt):
ATGGGGGTCGCGGGTTGCGGTCGGCCTCGGGAAGCCCGGGCGCTGTTGCTGCTGCTGCTGCTGCTGCCGC
CGCTGCTGGCCGCCGCCGTCCCTCCCGACCGGGGTCTCACCAACGGGCCGTCCGAGGATGTGGATGAGTG
TGCCCAAGGGCTCGATGACTGCCATGCTGATGCACTGTGTCAGAACACACCCACTTCCTACAAGTGCTCT
TGCAAGCCTGGCTACCAAGGGGAAGGCAGGCAGTGTGAGGACATGGATGAATGTGACAACACACTCAACG
GAGGCTGTGTCCACGACTGTTTAAATATTCCAGGCAACTATCGCTGCACCTGTTTCGATGGCTTCATGTT
GGCTCATGATGGTCATAATTGTCTTGATATGGACGAATGCTTGGAGAACAATGGTGGCTGCCAGCACATC
TGCACCAACGTTATTGGGAGCTATGAATGTCGCTGCAAAGAAGGTTTCTTTCTAAGTGACAATCAGCACA
CTTGCATTCACCGCTCAGAAGAAGGCCTGAGCTGTATGAACAAGGATCATGGCTGTGGTCACATCTGCAA
GGAGGCCCCAAGAGGCAGCGTTGCCTGTGAATGCAGGCCTGGTTTTGAACTGGCCAAAAACCAGAAAGAC
TGCATCTTGACTTGTAACCATGGAAATGGTGGGTGTCAGCACTCCTGTGAAGATACAGCAGAAGGCCCTG
AGTGTAGTTGCCATCCACGGTATAGGTTGCATGCTGATGGGAGAAGCTGCCTAGAGCAAGAGGGCACTGT
CTTGGAGGGGACAGAGAGCAATGCCACATCAGTGGCGGATGGAGATAAACGGGTGAAGCGTCGGCTGCTC
ATGGAAACGTGTGCCGTCAACAACGGAGGCTGCGACCGCACCTGTAAGGACACGTCCACAGGCGTCCACT
GCAGCTGCCCCACTGGATTCACTCTCCAGGTGGATGGGAAGACATGTAAAGATATCGATGAGTGCCAGAC
CCGGAATGGAGGTTGTAACCATTTCTGCAAAAACACCGTGGGCAGTTTTGACTGCAGTTGCAAAAAAGGA
TTTAAATTACTAACAGACGAGAAGTCTTGCCAAGATGTGGATGAATGTTCGTTGGAAAGGACCTGTGACC
ACAGTTGCATCAACCACCCTGGCACATTTATTTGTGCCTGCAACCCAGGGTACACTCTCTATAGCTTCAC
CCACTGTGGAGACACCAACGAGTGCAGTGTCAACAATGGAGGCTGCCAGCAAGTGTGCATCAACACAGTG
GGTAGCTACGAATGTCAGTGTCACCCAGGGTTCAAACTCCACTGGAATAAAAAAGACTGTGTGGAAGTGA
AGGGCTTCCCGCCCACTAGCATGACACCGCGTGTGTCCCTGCACTGTGGTAAAAGTGGTGGAGGAGACAG
GTGCTTCCTCAGATGTCGCTCTGGCATTCACCTCTCGTCAGGACTGCAAGAGGCTTACTCTGTCACCTGT
GGCTCTTCCTCTCTCAGAAGCAAACAGCAAAAATCAAATGACTCTGCCTTTGGGGATGTCGTCACCGTCA
GGACAAGTGTAACCTTTAAGCTAAATGAAGGCAAGTGTAGTTTGCAAAAGGCCAAGCTGTCTCCCGAGGG
TCTACGACCAGCACTACCAGAGAGGCACAGCTCAGTAAAAGAGAGCTTCCAGTACGCAAACCTTACATGC
AGCCCTGGCAAGCAAGTCCCGGGAGCCCTTGGCCGACTGAACGCCCCTAAGGAAATGTTTATCACGGTTG
AGTTTGAACGGGAAACTTACGAAAAGGAGGTGACAGCTTCCTGCAATCTGAGCTGCGTGGTAAAGCGGAC
AGAGAAGAGACTGCGGAAAGCTCTCCGCACACTCAAGAGAGCTGCCCACAGGGAGCAGTTTCATCTGCAG
CTCTCAGGCATGGACCTCGATATGGCTAAAACGCCCTCCAGAGTGTCAGGACAGCATGAAGAGACCTGTG
GAGTGGGACAGGGTCATGAAGAAAGCCAGTGTGGCCTTTGTCAGCCAGGTGAATATTCAGCAAATGGATT
TGCCCCTTGCCAGCTCTGTGCCCTGGGCACCTTTCAGCCTGATGTGGGCCGTACATCTTGCCTCTCATGC
GGAGGAGGTCTTCCCACCAAACATCTGGGAGCCACTTCCTTCCAGGATTGTGAAACCCGAGTTCAATGCT
CGCCTGGGCATTTCTACAACACCACCACACACCGATGTATCCGATGCCCACTAGGGACATACCAGCCTGA
ATTTGGAAAAAATAATTGTGTTTCCTGCCCGGGCAATACTACCACCGACTTTGATGGCTCCACCAACATA
ACACAGTGTAAAAACAGAAAGTGTGGAGGGGAGCTGGGGGATTTCACAGGGTATATTGAATCCCCAAACT
ACCCTGGGAACTACCCAGCCAACTCAGAGTGCACCTGGACCATCAACCCACCCCCCAAACGCCGGATCCT
GATTGTGGTCCCTGAGATCTTCCTGCCCATAGAGGATGACTGCGGTGACTACCTGGTGATGCGGAAAACC
TCTTCATCAAATTCTGTGACCACATATGAAACCTGCCAGACTTATGAACGCCCCATCGCCTTCACCTCCA
GGTCAAAGAAACTGTGGATTCAGTTCAAGTCCAATGAAGGGAACAGTGCCCGGGGGTTCCAGGTTCCCTA
TGTGACATACGATGAGGACTACCAGGAGCTCATTGAAGACATAGTTCGAGATGGCAGGCTCTATGCCTCT
GAGAACCATCAGGAAATACTGAAGGATAAGAAACTGATCAAGGCTCTGTTTGATGTCCTGGCACATCCCC
AGAACTATTTCAAGTACACAGCCCAGGAGTCCCGAGAGATGTTTCCAAGATCTTTCATCCGATTGCTACG
TTCCAAAGTGTCAAGGTTTCTGAGGCCTTACAAATGA

Translation (968 aa):
MGVAGCGRPREARALLLLLLLLPPLLAAAVPPDRGLTNGPSEDVDECAQGLDDCHADALCQNTPTSYKCS
CKPGYQGEGRQCEDMDECDNTLNGGCVHDCLNIPGNYRCTCFDGFMLAHDGHNCLDMDECLENNGGCQHI
CTNVIGSYECRCKEGFFLSDNQHTCIHRSEEGLSCMNKDHGCGHICKEAPRGSVACECRPGFELAKNQKD
CILTCNHGNGGCQHSCEDTAEGPECSCHPRYRLHADGRSCLEQEGTVLEGTESNATSVADGDKRVKRRLL
METCAVNNGGCDRTCKDTSTGVHCSCPTGFTLQVDGKTCKDIDECQTRNGGCNHFCKNTVGSFDCSCKKG
FKLLTDEKSCQDVDECSLERTCDHSCINHPGTFICACNPGYTLYSFTHCGDTNECSVNNGGCQQVCINTV
GSYECQCHPGFKLHWNKKDCVEVKGFPPTSMTPRVSLHCGKSGGGDRCFLRCRSGIHLSSGLQEAYSVTC
GSSSLRSKQQKSNDSAFGDVVTVRTSVTFKLNEGKCSLQKAKLSPEGLRPALPERHSSVKESFQYANLTC
SPGKQVPGALGRLNAPKEMFITVEFERETYEKEVTASCNLSCVVKRTEKRLRKALRTLKRAAHREQFHLQ
LSGMDLDMAKTPSRVSGQHEETCGVGQGHEESQCGLCQPGEYSANGFAPCQLCALGTFQPDVGRTSCLSC
GGGLPTKHLGATSFQDCETRVQCSPGHFYNTTTHRCIRCPLGTYQPEFGKNNCVSCPGNTTTDFDGSTNI
TQCKNRKCGGELGDFTGYIESPNYPGNYPANSECTWTINPPPKRRILIVVPEIFLPIEDDCGDYLVMRKT
SSSNSVTTYETCQTYERPIAFTSRSKKLWIQFKSNEGNSARGFQVPYVTYDEDYQELIEDIVRDGRLYAS
ENHQEILKDKKLIKALFDVLAHPQNYFKYTAQESREMFPRSFIRLLRSKVSRFLRPYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH