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Report for CCDS13906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13906.1 Public Homo sapiens 22 BPIFC 24 110 108 CCDS HistoryNCBI Gene:254240Re-query CCDS DB by CCDS ID:13906.1Re-query CCDS DB by GeneID:254240See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13906.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300399.9 ENSP00000300399.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300399.9Link to Ensembl Protein Viewer:ENSP00000300399.3Re-query CCDS DB by Nucleotide ID:ENST00000300399Re-query CCDS DB by Protein ID:ENSP00000300399
Original member Current member EBI ENST00000397452.5 ENSP00000380594.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397452.5Link to Ensembl Protein Viewer:ENSP00000380594.1Re-query CCDS DB by Nucleotide ID:ENST00000397452Re-query CCDS DB by Protein ID:ENSP00000380594
Original member Current member NCBI NM_174932.3 NP_777592.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174932.3Link to Protein Sequence:NP_777592.1Re-query CCDS DB by Nucleotide ID:NM_174932Re-query CCDS DB by Protein ID:NP_777592Link to BLAST:NP_777592.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777592.1 507 Q8NFQ6-1 507 100% 0 0

Chromosomal Locations for CCDS 13906.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 32414303 32414425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32415915 32415991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32417085 32417148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32419362 32419404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32431347 32431414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32432373 32432543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32433719 32433772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32435704 32435880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32437760 32437851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32442671 32442731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32445635 32445698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32445841 32445996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32447212 32447340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32453383 32453503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32457263 32457386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGTGTACAAAGACAATCCCAGTCCTCTGGGGATGTTTCCTCCTGTGGAATCTCTATGTCTCATCCTCTC
AGACCATTTACCCTGGAATCAAGGCAAGGATTACTCAGAGGGCACTTGACTATGGTGTTCAAGCTGGAAT
GAAGATGATTGAGCAAATGCTAAAAGAAAAGAAACTCCCAGATTTAAGCGGTTCTGAGTCTCTTGAATTT
CTAAAAGTTGATTATGTAAACTACAATTTTTCAAATATAAAAATCAGTGCCTTTTCATTTCCAAATACCT
CATTGGCTTTTGTGCCTGGAGTGGGAATCAAAGCGCTAACCAACCATGGCACTGCCAACATCAGCACAGA
CTGGGGGTTCGAGTCTCCACTTTTCCAAGACACAGGAGGGGCTGATCTGTTTCTCTCCGGAGTCTACTTT
ACCGGTATCATTATCCTAACCCGAAATGACTTTGGTCATCCTACCCTGAAGCTCCAAGATTGCTACGCCC
AACTGAGCCATGCCCACGTCTCATTTTCCGGAGAACTCAGTGTTCTGTATAACTCCTTTGCTGAGCCCAT
GGAGAAACCCATTTTAAAGAACTTAAATGAAATGCTCTGTCCCATTATTGCAAGTGAAGTCAAAGCGCTA
AATGCCAACCTCAGCACACTGGAGGTTTTAACCAAGATTGACAACTACACTCTGCTGGATTACTCCCTAA
TCAGTTCTCCAGAAATTACTGAGAACTACCTTGACCTGAACTTGAAGGGTGTATTCTACCCACTGGAAAA
CCTCACCGACCCCCCCTTCTCACCAGTTCCTTTTGTGCTCCCAGAACGCAGCAACTCCATGCTCTACATT
GGAATCGCCGAGTATTTCTTTAAATCTGCGTCCTTTGCTCATTTCACAGCTGGGGTTTTCAATGTCACTC
TCTCCACCGAAGAGATTTCCAACCATTTTGTTCAAAACTCTCAAGGCCTTGGCAACGTGCTCTCCCGGAT
TGCAGAGATCTACATCTTGTCCCAGCCCTTCATGGTGAGGATCATGGCCACAGAGCCTCCCATAATCAAT
CTACAACCAGGCAATTTCACCCTGGACATCCCTGCCTCCATCATGATGCTCACCCAACCCAAGAACTCCA
CAGTTGAAACCATCGTTTCCATGGACTTCGTTGCTAGTACCAGTGTTGGCCTGGTTATTTTGGGACAAAG
ACTGGTCTGCTCCTTGTCTCTGAACAGATTCCGCCTTGCTTTGCCAGAGTCCAATCGCAGCAACATTGAG
GTCTTGAGGTTTGAAAATATTCTATCGTCCATTCTTCACTTTGGAGTCCTCCCACTGGCCAATGCAAAAT
TGCAGCAAGGATTTCCTCTGTCCAATCCACACAAATTCTTATTCGTCAATTCAGATATTGAAGTTCTTGA
GGGTTTCCTTTTGATTTCCACCGACCTGAAGTATGAAACATCCTCAAAGCAGCAGCCAAGTTTCCACGTA
TGGGAAGGTCTGAACCTGATAAGCAGACAGTGGAGGGGGAAGTCAGCCCCTTGA

Translation (507 aa):
MCTKTIPVLWGCFLLWNLYVSSSQTIYPGIKARITQRALDYGVQAGMKMIEQMLKEKKLPDLSGSESLEF
LKVDYVNYNFSNIKISAFSFPNTSLAFVPGVGIKALTNHGTANISTDWGFESPLFQDTGGADLFLSGVYF
TGIIILTRNDFGHPTLKLQDCYAQLSHAHVSFSGELSVLYNSFAEPMEKPILKNLNEMLCPIIASEVKAL
NANLSTLEVLTKIDNYTLLDYSLISSPEITENYLDLNLKGVFYPLENLTDPPFSPVPFVLPERSNSMLYI
GIAEYFFKSASFAHFTAGVFNVTLSTEEISNHFVQNSQGLGNVLSRIAEIYILSQPFMVRIMATEPPIIN
LQPGNFTLDIPASIMMLTQPKNSTVETIVSMDFVASTSVGLVILGQRLVCSLSLNRFRLALPESNRSNIE
VLRFENILSSILHFGVLPLANAKLQQGFPLSNPHKFLFVNSDIEVLEGFLLISTDLKYETSSKQQPSFHV
WEGLNLISRQWRGKSAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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