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Report for CCDS39575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39575.1 Public Mus musculus 6 Tmf1 23 108 98 CCDS HistoryNCBI Gene:232286Re-query CCDS DB by CCDS ID:39575.1Re-query CCDS DB by GeneID:232286See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39575.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095664.5 ENSMUSP00000093325.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095664.5Link to Ensembl Protein Viewer:ENSMUSP00000093325.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095664Re-query CCDS DB by Protein ID:ENSMUSP00000093325
Original member Current member NCBI NM_001081111.2 NP_001074580.1 Accepted alive Link to Nucleotide Sequence:NM_001081111.2Link to Protein Sequence:NP_001074580.1Re-query CCDS DB by Nucleotide ID:NM_001081111Re-query CCDS DB by Protein ID:NP_001074580Link to BLAST:NP_001074580.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074580.1 1091 B9EKI3 1091 100% 0 0

Chromosomal Locations for CCDS 39575.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 97155354 97155497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97156844 97156969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97158046 97158198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97158461 97158562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97160243 97160335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97160531 97160600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97161368 97161560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97163519 97163675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97164049 97164141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97167249 97167405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97168088 97168254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97168748 97168890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97170326 97170431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97172213 97172339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97173300 97173403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97175770 97176968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97178882 97179023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3276 nt):
ATGAGCTGGTTCAATGCCTCGCAGTTGTCCAGCTTCGCCAAGCAGGCCCTGTCCCAGGCCCAGAAGTCCA
TCGACAGGGTCCTGGACATCCAGGAGGAGGAGCCGAGCGCCTGGGCCGAGGCCATCCCGTACGGCGAGCC
GGGAATAAGTCCCCCTGTGAGTGGAGGATGGGACACTTCAACCTGGGGATTGAACTCAACAAGCAGCGAA
CCTCAGAGTCCCCCAACAGCCTCTCAAGCAATTACAAAGCCAGTTCGAAGGACTGTAGTAGATGAATCTG
AAAATTTCTTCAGTGCCTTTCTCTCTCCGTCGGATGCCCATACCATTCAGAAGAGCCCAGTGGTATCAAA
ACCTCCATCTAAATCCCAGCGGCCAGAGGAAGAAGTGAAAAGCAGCTTACAAGAATCGTCATCTCCTGGC
CAGTCCAGAGTTTCTGAGACAGCTGAAGTGAGAGACTCCGTGTGTGTTTCTGGAGAGACTTCAGCCGTGG
GCACTCCCTCACCTGTACCTGAAGACAAGCATGAAGAAACGGCAGGTGAAGAGTCTGAGGTGAAGGTGCC
CACTGTGAGATTGAAGGCGTCTGAAAACGTAGTTAATGTAAACACAACAGAAGATGTATCTACCACATCC
ACTCAGTCTCTCACGGCAGAAACGAAGGATATGGCTTTGGAACCTAAAGAACAAAAACACGAAGACAGAC
AGAGCAACACACCTTCTCCTCCTGTTAGCTCCTTCTCGTCGGGCACCTCCACCACTAGTGACATTGAAGT
TTTAGATCACGAGAGTGTAATCAGTGAGAGCTCGGCCAGTTCGAGGCAAGAGACTTCGGATGCAAAGTCG
AGTCTTCACCTCATGCAGACGTCATTTCAGCTCCTCTCTGCGTCTGCTTGTCCCGAGTATAGCCGCTTAG
ATGACTTCCAGAAGCTCAATGAGAGTTGCTGCTCATCGGATGCTTTTGAAAGAATAGACTCATTTAGCGT
GCAGTCTCTAGATAGCCGGAGCGTAAGTGAAATCAACTCAGACGACGAACTGCCAGGCAAAGGCTATGCT
TTAGTACCCATAATAGTGAGTCCTTCAACCCCAAAGACTAAAGTAGTAGAATCTACTGAAGAGAATGCTG
AAGAAGAGGAAGGAAACGAGACATTAGTTGCGCCGTCTGAGGAAGCAGAATTAGAGGAAAGTGGCCGAAG
TGCTACTCCAGTGAACTGTGACCAGCCAGATATATTGGCTTCTCCCACAGCAGGAAGTGGCGGGCACTCT
GCCTCTGGACCGGCCACTGAGCAGTGTGAAGCTGTTGAAAACCAGCCAAAAGCACCGCCAGAGAAAGAAG
ATGTTTGCAAGACAGTTGAATTTCTGAATGAGAAGCTAGAAAAGAGGGAGACTCAGTTATTGTCCCTTAG
TAAAGAAAAGGCACTTCTGGAGGAAGCGTATGATAACCTGAAGGATGAAATGTTCAGAGTAAAAGAAGAA
AGTAGTAGCATTTCTTCCCTGAAAGATGAATTTACCCAGAGAATTGCAGAAGCAGAAAAGAAAGTTCAAC
TAGCCTGCAAGGAGAGAGATGCTGCTAAGAAGGAAATGAAAACCATAAAGGAAGAACTTGCCACTAGATT
AAATAGTAGTCAAACTGCAGACCTGTTGAAGGAAAAAGATGAACAGATTCAAGGTTTAATGGAAGAAGGA
GAAAAACTTTCAAAGCAGCAGCTGCATAATTCCAATATCATTAAGAAATTAAGAGCTAAAGATAAAGACA
ATGAAAATGTAATTGCAAAGCTGAACAGAAAAGCTAAGGAGCTGGAAGAGGAGTTACAGCACTTAAGACA
GGTCCTTGATGGCAAAGAGGAGGTTGAGAAACAACATAGAGAAAATATTAAAAAACTAAATTCTGTGGTA
GAACGCCAGGAGAAAGATCTTGGCCGACTTCAGGTAGACATGGATGAACTTGAAGAGAAGAGCCGAAGTA
CTCAGGCTGCCCTAGATAGTGCGTACAGAGAACTTACCGATCTTCACAAAGCCAATGCTGCTAAGGACAG
TGAGGTACAGGAAGCTGCTCTGAGGCGTGAGATGAAGGCTAAAGAAGAACTTTCTGGGGCACTGGAGAAG
GCCCAGGAAGAAGCCCGTCAGCAGCAAGAGGCATTAGTGCTTCAGGTGGGGGACCTCAGGCTAGCGCTGC
AGCGGGCGGAGCAAGCAGCTGCCAGAAAAGAGGATTACTTACGCCATGAGATCAGTGAACTTCAGCAGAG
ACTCCAAGAAGCAGAGAATCGAAACCAAGAGCTGAGTCAAAGTGTTTCATCAACAGCCAGACCGTTGCTG
CGACAGATAGAAAACTTACAAGCAACTCTGGGGTCCCAGACGTCCTCGTGGGAGACACTGGAGAAGAGTC
TTTCTGATAGGCTTGGTGAATCACAGACCTTGTTGGCTGCAGCAGTTGAAAGAGAACGTGCAGCTACAGA
AGAACTCCTGGCCAACAAAATCCAGATGTCTTCAGTGGAGTCACAGAATACGTTATTACGACAGGAAAAC
AGTAGACTTCAGGCCCAGCTAGAGTCAGAGAAAAATAAACTAAGAAAACTAGAGGATGAAAATAGTCGGT
ACCAAGTTGAATTAGAAAACCTAAAAGATGAATATGTAAGAACGCTTGAAGAGTCAAGGAAAGAGAAGAC
ACTTTTGAGCAGTCAGTTAGAAATGGAAAGAATGAAAGTTGAACAAGAAAGGAAGAAAACCATTTTCACT
CAAGAAGCACTAAAAGAAAAGGACCACAAGCTGTTTTCTGTTTGTAGCACTCCCACCATGTCACGTTCCA
GCTCTATAAGTGGAGTCGATGCTGCAGGGCTGCAAGCGTCCTTCCTGTCTCAGGATGAGTCTCATGACCA
TTCATTTGGGCCGATGTCTACATCAGCCAGTGGAAGCAACCTTTATGAAGCTGTAAGGATGGGAGCTGGA
TCGAGCATTATTGAAAATCTGCAGTCTCAGCTAAAGCTGAGGGAAGGAGAAATTAGTCATTTACAGCTGG
AAATTAGTAACCTAGAAAAAACTCGATCCATAATGTCCGAAGAGCTAGTTAAATTAACAAATCAGAATGA
TGAACTTGAGGAGAAAGTGAAAGAGATACCCAAGCTTCGAGTTCAGCTGCGAGATTTGGATCAAAGATAC
AACACTATTCTGCAGATGTATGGAGAAAAAGCAGAAGAAGCAGAGGAACTTCGCTTGGATCTTGAAGATG
TAAAAAATATGTATAAAACTCAAATAGATGAACTTCTAAGACAAAGGCTCAGTTAA

Translation (1091 aa):
MSWFNASQLSSFAKQALSQAQKSIDRVLDIQEEEPSAWAEAIPYGEPGISPPVSGGWDTSTWGLNSTSSE
PQSPPTASQAITKPVRRTVVDESENFFSAFLSPSDAHTIQKSPVVSKPPSKSQRPEEEVKSSLQESSSPG
QSRVSETAEVRDSVCVSGETSAVGTPSPVPEDKHEETAGEESEVKVPTVRLKASENVVNVNTTEDVSTTS
TQSLTAETKDMALEPKEQKHEDRQSNTPSPPVSSFSSGTSTTSDIEVLDHESVISESSASSRQETSDAKS
SLHLMQTSFQLLSASACPEYSRLDDFQKLNESCCSSDAFERIDSFSVQSLDSRSVSEINSDDELPGKGYA
LVPIIVSPSTPKTKVVESTEENAEEEEGNETLVAPSEEAELEESGRSATPVNCDQPDILASPTAGSGGHS
ASGPATEQCEAVENQPKAPPEKEDVCKTVEFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEE
SSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKEELATRLNSSQTADLLKEKDEQIQGLMEEG
EKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHRENIKKLNSVV
ERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQEAALRREMKAKEELSGALEK
AQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENRNQELSQSVSSTARPLL
RQIENLQATLGSQTSSWETLEKSLSDRLGESQTLLAAAVERERAATEELLANKIQMSSVESQNTLLRQEN
SRLQAQLESEKNKLRKLEDENSRYQVELENLKDEYVRTLEESRKEKTLLSSQLEMERMKVEQERKKTIFT
QEALKEKDHKLFSVCSTPTMSRSSSISGVDAAGLQASFLSQDESHDHSFGPMSTSASGSNLYEAVRMGAG
SSIIENLQSQLKLREGEISHLQLEISNLEKTRSIMSEELVKLTNQNDELEEKVKEIPKLRVQLRDLDQRY
NTILQMYGEKAEEAEELRLDLEDVKNMYKTQIDELLRQRLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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