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Report for CCDS40082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40082.1 Public Mus musculus 7 Trim66 23 108 98 CCDS HistoryNCBI Gene:330627Re-query CCDS DB by CCDS ID:40082.1Re-query CCDS DB by GeneID:330627See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40082.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033339.7 ENSMUSP00000033339.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033339.7Link to Ensembl Protein Viewer:ENSMUSP00000033339.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033339Re-query CCDS DB by Protein ID:ENSMUSP00000033339
Original member Current member NCBI NM_181853.4 NP_862901.3 Accepted alive Link to Nucleotide Sequence:NM_181853.4Link to Protein Sequence:NP_862901.3Re-query CCDS DB by Nucleotide ID:NM_181853Re-query CCDS DB by Protein ID:NP_862901Link to BLAST:NP_862901.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_862901.3 1242 Q924W6-3 1242 100% 0 0

Chromosomal Locations for CCDS 40082.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 109453975 109454034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109455027 109455245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109455632 109455784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109456062 109456136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109457046 109457172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109457548 109457834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109458111 109458285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109458741 109458801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109460158 109460350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109460493 109461014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109472234 109472395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109475052 109475959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109477638 109477755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109480926 109481072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109481883 109481997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109483032 109483148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109483638 109483770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109484578 109484725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109486047 109486055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3729 nt):
ATGGCCAGGAACTGCTCTGAGTGCAAGGAGAAGCGGGCAGCACACATCCTCTGCACATACTGCAACCGCT
GGCTGTGCAGCTCCTGCACAGAGGAGCACCGGCATGTCCCAGCCCCGGGGGGCCCACTCTTTGCACGGGC
ACAGAAGGGATCCTCAGGGGTGAATGGTGGCTCTGGGGACTTTGCCTTGTACTGCCCTCTGCACACACAG
GAAGTGCTCAAGCTTTTCTGCGAGACGTGCGATGTACTCACCTGCCACAGCTGCCTGATGGTGGAGCACA
AAGAGCACAGATGCAGGCACGTGGAAGAAGTTCTACAAAACCAGAGGATGCTCCTGGAGAGTGTGACTTC
CCAGGTGGCACATAAGAAATCCAGCCTACAGACATCTGCAAAGCAAATCGAGGACAGAATTTTTGAAGTG
AAGCATCAGCACCGGAAGGTGGAGAACCAGATTAAAATGGCCAAGATGGTCCTCATGAACGAGTTGAACA
AGCAAGCCAACGGGCTCATAGAGGAGCTTGAGGGCATCACTAATGAGAGAAAGCGAAAGCTGGAGCAGCA
GCTGCAGAGCATCATGGTTCTCAACCGGCAGTTTGAACATGTGCAGAATTTCATCAACTGGGCTGTCTGC
AGCAAAAGCAGCGTCCCTTTCCTTTTCAGCAAAGAGCTGATTGTGTTTCAGATGCAGCGGTTGCTGGAGA
CGAGATGTAACACAGATCCTGGCTCTCCTTGGAGTATCAGATTCACCTGGGAGCCCAACTTCTGGACCAA
GCAGCTGGCTTCCCTTGGCTGCATAACCACTGAAGGTGGACAGCTGACCCGGGCAGATGCTGCAGCTGCC
TCTTATGGGAGTTTACAGGGGCAGCCATCTTTTTATCAGAGCCACCAGGCCCCCATGGCTCAGCAGGAGG
CACTCAGCCACCCCTCACACAAGTTCCAGTCTCCAGCACTGTGTTCCTCGTCTGTCTGCTGCTCCCACTG
CTCTCCAGTCTCGCCTTCCCTCAAAGGTCAAGTCCCTCCACCCAGCATCCACCCGGCTCACAGTTTCCGA
CAGCCTTCTGAAATGGTGCCCCACCAGCTGGGGTCACTGCAGTGTTCTACCCTGCTGCCCAGGGAGAAAG
AGCTGGCCTGCAGTCCTCATCCACCCAAACTGATGCAGCCCTGGTTGGAACCACAACCTCCTGCAGAACA
GGAGAGTACATCCCAGCGGCCAGGACCGCAACTGGTTTCCCAGCCTGTGTGCATCGTCCCTCCGCAAGAT
GTGCAGCCAGGAGCCCATGCCCAGCCCACCATACAGACACCCTCCATCCAAGTTCAGCTGGGCCACCATC
AGAAGCTAAAGCTCAGCCACTTTCAGCAGCAGCCGCAGCAGCAGCCACCCCCACCACCGCCACCTCCCCC
ACCCCCCCAGCATGCACCTCCACCCTTGCCTCCATCCCAGCACCTGGCTTCCAGTCAGCACGAGAGCCCT
CCTGGGCCTGCCTGTTCGCAGAATGTGGACATTATGCACCACAAGTTTGAGCTGGAGGAGATGCAGAAGG
ACTTGGAGCTTCTCCTGCAGGCCCAGCAGCCTAGCCTGCAGTTGAGTCAGACCAAGTCTCCTCAGCATCT
TCAGCAAACCATCGTGGGGCAGATCAACTACATCGTGAGGCAGCCAGCACCCGTGCAGTCCCAGAGCCAG
GAGGAGACCCTGCAGGTTACAGAGGAGCCACCAGCACCTGAGGGCCCAAAGCCAGCTCTACCTGTTGACA
AGAACACTGCTGCTCCCTTGCCCCAGACATCTGGGGAGGAAACGCCTCACAGTGTCCCTCCAGTGGATGG
CACCTCCCAGCACTCTTCTCCAAATGTGGTGAGAAAGCACGCCACCTCAGTGAGCATCATGGGCTTTTCC
AACACTGTGGAGATGGAGTTGTCATCTACCAGGCTGGCGAGGACCATAGAGCCACAGATACACAGGGTGA
GCAGCCTGACAGCTGCCCCCACCCACACAATTCCGAGCTTGCTGAGTGGCCCACCACAAACTGTGTCCAG
CCTGATGAGTGTTTCAAACCATGCCATGCCAAGCCTGACAGCCAGTCACCTGCAGCCCGTGCCAAACCTT
GTGCGTGGCACATTCCAGTCCACGTCGAACCTGAGGGGTGATTCCTCTCAAGCCATCACAGGCCTGGCAA
GTAATCACTCACAAGCTGGGCCCAGCCTAATGTCTGGGCACACCCAGGCTGCGCCGAGTCTGGCCACTTG
TCCTCTGCAGGGAATGCCACCGGTTTCTGATGTGCATGTGGAGCCGAGATCCGTATCCAGTCCTGGGTCT
GGCCCAGCTGCAGAAAGCCTGGGTACCAGGGATGGGGCTGAGTCCTCCCTGGGGAATGCCTTGTGTAAGA
TGGAAAGTGAGGATTGTACCCGTTTCTCAGACTCAGTAGGACAAGGCCCTACAGCCTCCAGTCTGGATGG
TCCCAAGGATTTGGCTATTCCCTCAGAACTGGAGGAACCAATTAACCTCTCTGTGAAAAAACCTTTCCTG
GCACCAGTGATCAACACATCCACTGCTCTGCAACAGTACCGGAATCCAAAAGAATATGAGAATTTTGAAC
AAGGAGCCCTAGAGCTGGATACAAAGGAGAATTCAGACATCAGAGCTATCAGTAGTGAGCCCAAGATCCC
CTACGTGCGACTGGAGCGGCTCAAGATCTGTGCTGCCTCATCAGGAGAGATGCCTGTGTTTAAGCTGAAG
CCCCAGAAAAATAGCCAGGACGGAAACTTCCTCCTGGTGATTGAGTGTGGCACTGAGTCCTCCAGCATGT
CCATTAAGGTCAGCCAGAACAGCCTGCCTGATGCCAGCCAGGGCCCAGGTCTTGGGGGAAGAAAGGTCAC
TGTCACATCTCTGACTGGGCAGCAGCCACAAGAGGTGGAGAGCACATCTGAGGAACACAGACTCATCCCC
CGAGCTCCAGGAGCCAAGAAGAACACCCCGGCCCCCATAGAGAATGAGGACTTCTGTGCGGTGTGCATCA
ACGGTGGGGAGCTGCTATGCTGTGACCGCTGCCCCAAAGTGTATCACCTTTCCTGCCACGTGCCAGCCTT
GCTCAGCTTCCCAGGGGGAGAATGGGTGTGCACCCTGTGCCGCAGCCTGACGCAGCCTGAGATGGAGTAC
GACTGTGAGAACGCGCGCTACGGTCACCCTGGAGTGCGGGTACTTCCCGGCCTGAGCATGTATGACCAGA
AGAAGTGTGAGAAGCTGGTCCTGTCCCTGTGCTGCAACAGCCTCAGCCTGCCCTTCCATGAACCAGTCAG
CCCTCTGGCCAGGCATTATTACCAGATTATCAAGAGGCCCATGGACCTGTCAATCATCCGGAGGAAACTG
CAAAAGAAGGACCCAGCTCATTACACTACTCCAGAGGAAGTGGTGTCAGATGTACGCCTCATGTTCTGGA
ACTGTGCTAAGTTCAATTATCCTGACTCGGAGGTTGCAGAGGCTGGCCGCTGTCTGGAAGTGTTCTTTGA
AGGCTGGCTAAAGGAGATCTACCCAGACAAATGCTTTGCCCAGCCCCAGCAAGAGGATTCAGACTCTGAG
GACGTATCTGGCGAGAGTGGCTGTTCCACTCCTCAGGGCTTCCCATGGCCTCCCTACATGCAGGAAGGCA
TCCAGCCCAAGAGGCGACGGCGGCATATGGAGAATGAGAAGACAAAGAGAGTGTCGTTTCGTCTGGCCAA
CAGCATCTCGCAGGTGTGA

Translation (1242 aa):
MARNCSECKEKRAAHILCTYCNRWLCSSCTEEHRHVPAPGGPLFARAQKGSSGVNGGSGDFALYCPLHTQ
EVLKLFCETCDVLTCHSCLMVEHKEHRCRHVEEVLQNQRMLLESVTSQVAHKKSSLQTSAKQIEDRIFEV
KHQHRKVENQIKMAKMVLMNELNKQANGLIEELEGITNERKRKLEQQLQSIMVLNRQFEHVQNFINWAVC
SKSSVPFLFSKELIVFQMQRLLETRCNTDPGSPWSIRFTWEPNFWTKQLASLGCITTEGGQLTRADAAAA
SYGSLQGQPSFYQSHQAPMAQQEALSHPSHKFQSPALCSSSVCCSHCSPVSPSLKGQVPPPSIHPAHSFR
QPSEMVPHQLGSLQCSTLLPREKELACSPHPPKLMQPWLEPQPPAEQESTSQRPGPQLVSQPVCIVPPQD
VQPGAHAQPTIQTPSIQVQLGHHQKLKLSHFQQQPQQQPPPPPPPPPPPQHAPPPLPPSQHLASSQHESP
PGPACSQNVDIMHHKFELEEMQKDLELLLQAQQPSLQLSQTKSPQHLQQTIVGQINYIVRQPAPVQSQSQ
EETLQVTEEPPAPEGPKPALPVDKNTAAPLPQTSGEETPHSVPPVDGTSQHSSPNVVRKHATSVSIMGFS
NTVEMELSSTRLARTIEPQIHRVSSLTAAPTHTIPSLLSGPPQTVSSLMSVSNHAMPSLTASHLQPVPNL
VRGTFQSTSNLRGDSSQAITGLASNHSQAGPSLMSGHTQAAPSLATCPLQGMPPVSDVHVEPRSVSSPGS
GPAAESLGTRDGAESSLGNALCKMESEDCTRFSDSVGQGPTASSLDGPKDLAIPSELEEPINLSVKKPFL
APVINTSTALQQYRNPKEYENFEQGALELDTKENSDIRAISSEPKIPYVRLERLKICAASSGEMPVFKLK
PQKNSQDGNFLLVIECGTESSSMSIKVSQNSLPDASQGPGLGGRKVTVTSLTGQQPQEVESTSEEHRLIP
RAPGAKKNTPAPIENEDFCAVCINGGELLCCDRCPKVYHLSCHVPALLSFPGGEWVCTLCRSLTQPEMEY
DCENARYGHPGVRVLPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKL
QKKDPAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQEDSDSE
DVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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