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Report for CCDS45937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45937.1 Public Homo sapiens 19 SLC25A41 24 110 108 CCDS HistoryNCBI Gene:284427Re-query CCDS DB by CCDS ID:45937.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45937.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321510.7 ENSP00000322649.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321510.7Link to Ensembl Protein Viewer:ENSP00000322649.5Re-query CCDS DB by Nucleotide ID:ENST00000321510Re-query CCDS DB by Protein ID:ENSP00000322649
Original member Current member EBI ENST00000597558.5 ENSP00000471238.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000597558.5Link to Ensembl Protein Viewer:ENSP00000471238.1Re-query CCDS DB by Nucleotide ID:ENST00000597558Re-query CCDS DB by Protein ID:ENSP00000471238
Original member Current member NCBI NM_173637.4 NP_775908.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173637.4Link to Protein Sequence:NP_775908.2Re-query CCDS DB by Nucleotide ID:NM_173637Re-query CCDS DB by Protein ID:NP_775908Link to BLAST:NP_775908.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775908.2 370 Q8N5S1-1 370 100% 0 0

Chromosomal Locations for CCDS 45937.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6426389 6426561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6427103 6427250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6427334 6427501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6429724 6429831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6430009 6430161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6432049 6432204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6433487 6433693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGGCGCTCAGCCTGGGGAACCTCAGAACACTTGCTCTAGGATCCAGACACTGTTTAGGAGGGTCAAGA
CCTTACTCATCAAAGCCCCGCCTCCCCCCCAACCTCCGCCTCCACCCCCATCCTGGAACCCTGGCTGTAC
ACACGTGTATGGGTACGCGTTTGGCCACATGCATGACAACAACCTTGAACATCTCCCGTCACAGCAGGTA
CTGGACACAGGAGAGCAGCTGATGGTCCCCGTGGAAGTCCTGGAAGTGGATAACAAGGAGGCCTTGTGGA
AGTTTCTACTCTCAGGAGCTATGGCCGGGGCGGTGTCTCGCACGGGCACGGCACCTCTGGACAGAGCCAA
GGTGTACATGCAGGTCTACTCCTCCAAGACGAACTTCACCAACCTGCTGGGGGGGCTACAGAGCATGGTC
CAGGAGGGCGGCTTCCGCTCCCTGTGGCGGGGCAACGGCATCAACGTGCTCAAGATTGCTCCTGAGTATG
CCATCAAGTTCTCCGTATTCGAGCAGTGCAAGAATTACTTCTGTGGAATACAAGGGTCCCCGCCCTTCCA
GGAGCGTCTCCTTGCTGGCTCCCTGGCTGTGGCCATCTCCCAGACCCTCATCAACCCCATGGAGGTGCTG
AAGACGCGGTTGACCTTGCGTCGGACGGGCCAGTACAAGGGGCTGCTGGACTGCGCCAGGCAGATCTTGC
AGCGAGAGGGCACCCGCGCCCTTTACCGCGGCTACCTGCCCAATATGCTCGGCATCATCCCCTATGCCTG
CACCGACCTGGCTGTCTATGAGATGCTCCAGTGCTTCTGGGTGAAGTCAGGCAGGGATATGGGGGACCCC
AGTGGCCTGGTCAGTCTGTCGTCTGTGACGCTATCCACGACCTGTGGCCAGATGGCCAGCTACCCACTGA
CTCTGGTGCGCACCAGGATGCAGGCCCAAGATACCGTGGAGGGCTCAAATCCCACCATGCGCGGAGTCCT
CCAGCGGATCCTGGCCCAGCAGGGCTGGCTAGGGCTGTACCGAGGCATGACCCCCACGCTACTGAAGGTC
TTACCAGCAGGTGGCATCAGCTATGTGGTGTACGAAGCCATGAAGAAAACCCTGGGCATATAG

Translation (370 aa):
MGAQPGEPQNTCSRIQTLFRRVKTLLIKAPPPPQPPPPPPSWNPGCTHVYGYAFGHMHDNNLEHLPSQQV
LDTGEQLMVPVEVLEVDNKEALWKFLLSGAMAGAVSRTGTAPLDRAKVYMQVYSSKTNFTNLLGGLQSMV
QEGGFRSLWRGNGINVLKIAPEYAIKFSVFEQCKNYFCGIQGSPPFQERLLAGSLAVAISQTLINPMEVL
KTRLTLRRTGQYKGLLDCARQILQREGTRALYRGYLPNMLGIIPYACTDLAVYEMLQCFWVKSGRDMGDP
SGLVSLSSVTLSTTCGQMASYPLTLVRTRMQAQDTVEGSNPTMRGVLQRILAQQGWLGLYRGMTPTLLKV
LPAGGISYVVYEAMKKTLGI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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