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Report for CCDS86971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86971.1 Public Homo sapiens 20 C20orf204 24 110 108 CCDS HistoryNCBI Gene:284739Re-query CCDS DB by CCDS ID:86971.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86971.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000636176.2 ENSP00000489747.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000636176.2Link to Ensembl Protein Viewer:ENSP00000489747.1Re-query CCDS DB by Nucleotide ID:ENST00000636176Re-query CCDS DB by Protein ID:ENSP00000489747
Original member Current member NCBI NM_001348090.2 NP_001335019.1 Accepted alive Link to Nucleotide Sequence:NM_001348090.2Link to Protein Sequence:NP_001335019.1Re-query CCDS DB by Nucleotide ID:NM_001348090Re-query CCDS DB by Protein ID:NP_001335019Link to BLAST:NP_001335019.1
Original member Current member NCBI NM_001387010.1 NP_001373939.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001387010.1Link to Protein Sequence:NP_001373939.1Re-query CCDS DB by Nucleotide ID:NM_001387010Re-query CCDS DB by Protein ID:NP_001373939Link to BLAST:NP_001373939.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335019.1 189 A0A1B0GTL2 189 100% 0 0
NP_001373939.1 189 A0A1B0GTL2 189 100% 0 0

Chromosomal Locations for CCDS 86971.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 64036324 64036326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64037927 64038202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64038296 64038448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64038622 64038759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGGTACCCCCTAAGCCTGCACTCTGGGCGCTCCTGCTGGCGCTGCTGGGGACCGCGCCAAGCCGCGCCT
ATTCCCCGGCCTGCAGCGTCCCCGACGTGCTCCGCCACTATCGCGCCATCATCTTCGAGGATCTGCAGGC
CGCCGTGAAGTGGGGCGGGGCGGGGGCCGAAAAGACCAGGCCAGGCTCCAGACACTTTCATTTCATACAG
AAAAACCTGACTAGACCCGGGAGCTCGGGACGGCGGGGACGGCCTCGGGCCTCCTGTGGCGCCCAGAAGG
AGCACAGTATCCTCCTGTCCATCTCGTCCCTGGGTCGGACCCTGCGCGGGGCGGTGGCCGGGGGCCGCCG
CGGGGCCCTGGAGAGAGCTGCTTGGACCGTGGCTGTGCGCACCGAGGCGGTGATGCGGCGCCACTGCAGG
ACGCTGCGCCAGCGGAGCCGGCGGCCCAAGATGCGCCCTGCCCGGCGTCGCGGCGGCCGAAGGCAGCTCC
TGCTGCGCGCCCTGGACGCCGTCGCCACCTGCTGGGAGAAGCTCTTCGCGCTGCGCGCCCCGGCCTCCAG
GGACTCCTAG

Translation (189 aa):
MVPPKPALWALLLALLGTAPSRAYSPACSVPDVLRHYRAIIFEDLQAAVKWGGAGAEKTRPGSRHFHFIQ
KNLTRPGSSGRRGRPRASCGAQKEHSILLSISSLGRTLRGAVAGGRRGALERAAWTVAVRTEAVMRRHCR
TLRQRSRRPKMRPARRRGGRRQLLLRALDAVATCWEKLFALRAPASRDS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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