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Report for CCDS49219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49219.1 Public Mus musculus 13 Vmn1r196 23 108 98 CCDS HistoryNCBI Gene:100312484Re-query CCDS DB by CCDS ID:49219.1Re-query CCDS DB by GeneID:100312484See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49219.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091735.1 ENSMUSP00000089329.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091735.1Link to Ensembl Protein Viewer:ENSMUSP00000089329.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000091735Re-query CCDS DB by Protein ID:ENSMUSP00000089329
Original member Current member EBI ENSMUST00000228557.1 ENSMUSP00000154145.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228557.1Link to Ensembl Protein Viewer:ENSMUSP00000154145.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228557Re-query CCDS DB by Protein ID:ENSMUSP00000154145
Original member Current member EBI ENSMUST00000228382.1 ENSMUSP00000154358.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228382.1Link to Ensembl Protein Viewer:ENSMUSP00000154358.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228382Re-query CCDS DB by Protein ID:ENSMUSP00000154358
Original member Current member NCBI NM_001167541.1 NP_001161013.1 Accepted alive Link to Nucleotide Sequence:NM_001167541.1Link to Protein Sequence:NP_001161013.1Re-query CCDS DB by Nucleotide ID:NM_001167541Re-query CCDS DB by Protein ID:NP_001161013Link to BLAST:NP_001161013.1

Chromosomal Locations for CCDS 49219.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 22293193 22294098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGAAGTTAAAAATAGTTTTGAATATTAGTGAAATAACTGTATTCCTTCTTTTCACTGGACTTGGCACTG
TGGCAAATGTTTCCATTTTTGTGAATTATATATGTACTTTTATGGGGTCTGGAAAAAAGTCTATATACCT
TATTCTTATCCACTTGGCTTTGACAAATATTACATTGCTTTTTTCCAAGGTAATGCCAGTGACAATTGCA
GCTTTAGGGTTGAGACACTTTCTAGGTGATATAGGCTGTCACGTTATTGTTTATCTAGAAAGGATGGCCC
GGGGTCTGTCCATCTGCACCAGCAGTCTCCTCACAGTGGTCCAAGCAGTTATCATGAGCCCCAGAGCCTC
CTGGTGGGGGAGGCTCAGACTAAGGTCTAAATGGCATGTGCTTCTCTCTCTGTTCTTCCTATGGATTCTA
AATATGTTGATCAGCATGAACTTCCTCCTTTCCATCAGAGACACAGCTACAGACACCTTACAACTGAGGC
AGATTAGTGAATATTGTTATTTCAAAAAAGAAAGTCAGAGAAGAAACAACATTTTTCTCATCCTCATGGT
CCTGAGAGATGCAGTGTTTCAGGGTGCCATGGGAGGGGCCAGTGGCTACATGGTATTTCTTCTCCACAAG
CACCACCAGCATGTCCTCTACCTTCAGAACTCCAAGCTTCTCTACAGAACTCCCCCTGAGCTGAGAGCTG
CTCAAAGTGTCCTCCTTCTGATGCTCTGTTTTGTTTTCTTTTATTGGACAGATTGTGTTGTTTCTTTGTA
TTTATCTTCTTCCTCGAATAATGACTCCTTAACTATTCATTTTCAAGAATTTCTGACCATTGGTTATGCA
GTTCTTAGCCCATTTATGCTGATTCAGAGGGATGGACTTCTGGCTGAATGTTGCCATGCTCGTTAA

Translation (301 aa):
MKLKIVLNISEITVFLLFTGLGTVANVSIFVNYICTFMGSGKKSIYLILIHLALTNITLLFSKVMPVTIA
ALGLRHFLGDIGCHVIVYLERMARGLSICTSSLLTVVQAVIMSPRASWWGRLRLRSKWHVLLSLFFLWIL
NMLISMNFLLSIRDTATDTLQLRQISEYCYFKKESQRRNNIFLILMVLRDAVFQGAMGGASGYMVFLLHK
HHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCVVSLYLSSSSNNDSLTIHFQEFLTIGYA
VLSPFMLIQRDGLLAECCHAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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