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Report for CCDS18287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18287.1 Public Mus musculus 4 Kdm4c 23 108 98 CCDS HistoryNCBI Gene:76804Re-query CCDS DB by CCDS ID:18287.1Re-query CCDS DB by GeneID:76804See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030102.11 ENSMUSP00000030102.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030102.11Link to Ensembl Protein Viewer:ENSMUSP00000030102.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030102Re-query CCDS DB by Protein ID:ENSMUSP00000030102
Original member Current member EBI ENSMUST00000077851.9 ENSMUSP00000077017.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077851.9Link to Ensembl Protein Viewer:ENSMUSP00000077017.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077851Re-query CCDS DB by Protein ID:ENSMUSP00000077017
Original member Current member NCBI NM_144787.2 NP_659036.1 Accepted alive Link to Nucleotide Sequence:NM_144787.2Link to Protein Sequence:NP_659036.1Re-query CCDS DB by Nucleotide ID:NM_144787Re-query CCDS DB by Protein ID:NP_659036Link to BLAST:NP_659036.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659036.1 1054 Q8VCD7 1054 100% 0 0

Chromosomal Locations for CCDS 18287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 74262826 74262969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74271194 74271369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74280897 74281011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74298441 74298634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74306965 74307014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74311647 74311750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74315512 74315649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74330655 74330848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74333633 74333868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74334549 74334868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74336882 74336990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74343370 74343551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74345443 74345656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74348400 74348476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74357342 74357397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74359420 74359528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74373566 74373751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74377630 74377800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74391377 74391496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74399347 74399439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74404821 74404997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3165 nt):
ATGGAGGTGGTGGAGGTGGAGAGTCCCCTAAATCCCAGCTGTAAGATAATGACCTTCAGACCTTCCATGG
AGGAGTTTCGGGAGTTCAACAAATACCTCGCATACATGGAATCCAAAGGAGCCCATCGAGCAGGTCTTGC
CAAGGTGATTCCTCCTAAGGAGTGGAAGCCAAGACAGTGCTATGATGATATTGATAATTTGCTCATCCCA
GCACCAATTCAGCAGATGGTCACAGGGCAGTCGGGACTGTTCACGCAATACAACATCCAGAAGAAAGCCA
TGACTGTGAAGGAGTTCAGGCAGCTGGCTAACAGCAGCAAATACTGTACTCCAAGATACTTGGATTATGA
AGATTTGGAACGCAAATACTGGAAAAACTTAACTTTTGTGGCACCTATTTATGGAGCAGATATAAATGGG
AGCATTTATGATGAGGGTGTGGATGAATGGAATATAGCTCGCCTAAATACAGTCTTGGATGTGGTTGAAG
AAGAGTGTGGTATTTCTATTGAGGGGGTAAATACCCCTTATCTCTATTTTGGAATGTGGAAAACAACATT
TGCGTGGCACACGGAGGACATGGATCTCTACAGTATTAATTATCTCCACTTTGGGGAGCCCAAGTCTTGG
TATGCTATACCTCCGGAGCATGGAAAGCGACTTGAAAGACTAGCCCAAGGCTTCTTCCCCAGTAGCTCCC
AAGGCTGTGATGCATTTCTCCGGCACAAGATGACCCTCATTTCCCCCTCAGTGCTGAAGAAGTATGGCAT
TCCCTTCGACAAGATCACCCAGGAGGCTGGAGAGTTTATGATCACTTTTCCTTATGGATATCATGCTGGT
TTTAATCATGGTTTCAATTGTGCTGAGTCTACAAATTTTGCTACAGTCAGATGGATTGACTACGGCAAGG
TTGCTAAGTTGTGCACTTGTCGGAATGACATGGTGAAGATATCAATGGATATATTTGTGAAGAAATTTCA
GCCAGATAGATACCAGATTTGGAAACAAGGAAAGGATATATATACTATTGACCATACAAAGCCCACTCCA
GAATCTACTCCAGAAGTAAAAACATGGCTACAGAGGAAGAAAAAATTAAGAAAGCCTCCCAAGAGCTTAC
AGGGCAATAAGCCACTTTGTAAAAGGCCTAAACCTGAAGAAGATGAGGAATTTGCTGAATTTAGTGGGGA
AGAGGGTGCAAACCCTGCCATGGGCCCTAGGCACCTCAAAGTCACTGAAAAGCCAGAAAAAGCATTAAAG
CTGGGGAAATTAGAAGAATCTTCAGCAAAAGAAGCTTTGGATACCAGGATACAAGTGGATCAAAGCTTAC
TGAACGACACCAAGCTCTCGGGAAAAGGTTGCATAAGTTCATCAGTAACAGCTGAAATTCCACCAGAAGA
CAACAGAGCCAGTGCTGTAATTTCACCATCTCAGCTGAAGGAGGGCGCTGACTGCATACCACTTTCTCAT
GGCCATCAAGCAGGCAAAGAGTCACATCTACTTAAGATTCTAAAGCTTGAATCTCCCAAGATACCTTCCC
CCCTGCCAGAAAGTAATAAAGTATTGACAGAGGGAGAAGAAAATGATGAAGAGGGCCATGGAAGTAACCT
TGAGCCTGGGGAAATCCCAGAAGCTCTTAGTGAAGAGAGAAATGGGCTCAACATTCCTAAGATAATTGAA
GGACAGCCAAAAACTACTAAGAGTTGGCGCCATCCACTTGGTAAGCCTCCGGCCAGATCCCCAATGACAC
TTGTGAAGCAGCAGGTAGCGAGTGATGAAGAATTGCCTGAGGTTCTAAGCATTGACGAAGAAGTTGAAGA
AACAGAGTCTTGGGCAAAGCCTCTCATCCACCTTTGGCAGACAAAGTCTCCTAACTTTATGGCTGAACAG
GAGTACAATGCAACTGTTGCAAAAATGGAGCCAAACTGTGCCATCTGCACTCTGCTCATGCCGTACTACA
AGCCTGATAGCAGCAAAGAAGAAAATGATTCTAGATGGGAGACAGCAGTAAATGAAGTGGTTCAATCTGG
AAGAAAGACTAAGCCCATTATTCCAGAGATGTGTTTTATTTATAGTGAAGAAAATGTAGACTATTCCCCC
CCAAATGCCTTCCTTGAAGAAGATGGAACAAGTCTTCTGATTTCCTGTGCCAAGTGCTTCGTGCGGGTTC
ATGCAAGTTGTTATGGTGTCCCTTCTCATGAAGTCTGTGATGGATGGCTGTGTGCCCGGTGCAAGAGAAA
TGCATGGACTGCAGAATGCTGTCTCTGCAATTTGAGGGGAGGTGCTCTGAAACAGACTAAGAACAATCAG
TGGGCTCATGTCATATGTGCTGTTGCAGTTCCAGAAGTGCGATTCACTAATGTCCCAGAACGGACACAAA
TAGATGTAGACAGAATACCTTTACAGAGGTTAAAATTGAAATGCATCTTCTGTAGACACCGGGTTAAAAA
GGTTTCTGGAGCCTGCATCCAGTGTTCTTATGGCCGCTGCCCAGCTTCATTCCATGTTACGTGTGCCCAT
GCTGCTGGAGTGCTCATGGAGCCTGATGACTGGCCTTACGTGGTAAACATCACATGCTTCAGACATAGAG
TCAACTCAAACGCGAAATCCAAAACTTGTGAGAAAGCCATTTCTGTGGGTCAGACAGTCATCACAAAACA
TCGAAACACTCGGTACTACAGCTGCAGAGTGATAGATGTGACATCTCAAACCTTCTATGAGGTCATGTTT
GATGATGGCTCCTTCAGCAGAGACACATTTCCTGAAGATATTGTGAGCCGAAACTGTGTGAAGCTGGGCC
CTCCTGCGGAGGGAGAAGTCATCCAAGTCAAATGGCCTGATGGTAAACTCTATGGGGCAAAGTATCTTGG
ATCAAATGTTGCCTATATGTATCAGGTTGAATTTGAAGATGGATCGCAGATTGCAATGAAGAGAGAAGAC
ATATACACTTTAGATGAAGAGTTACCCAAGAGAGTAAAGGCTCGTTTTTCCACAGCCTCCGACATGCGAT
TTGAAGACACATTTTATGGAGCAGATGTAATCCAAGGGGAGAGGAAGAGGCAAAGAGTGCTAAGCTCCAG
GCTCAAGAATGAGTATGTGGATGACCCTGTGTATCGTACTTTCCTGAAGAGTTCTTTCCAGAAGAAGTGT
CAGAAGAGACAGTAG

Translation (1054 aa):
MEVVEVESPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDIDNLLIP
APIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLANSSKYCTPRYLDYEDLERKYWKNLTFVAPIYGADING
SIYDEGVDEWNIARLNTVLDVVEEECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSW
YAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPYGYHAG
FNHGFNCAESTNFATVRWIDYGKVAKLCTCRNDMVKISMDIFVKKFQPDRYQIWKQGKDIYTIDHTKPTP
ESTPEVKTWLQRKKKLRKPPKSLQGNKPLCKRPKPEEDEEFAEFSGEEGANPAMGPRHLKVTEKPEKALK
LGKLEESSAKEALDTRIQVDQSLLNDTKLSGKGCISSSVTAEIPPEDNRASAVISPSQLKEGADCIPLSH
GHQAGKESHLLKILKLESPKIPSPLPESNKVLTEGEENDEEGHGSNLEPGEIPEALSEERNGLNIPKIIE
GQPKTTKSWRHPLGKPPARSPMTLVKQQVASDEELPEVLSIDEEVEETESWAKPLIHLWQTKSPNFMAEQ
EYNATVAKMEPNCAICTLLMPYYKPDSSKEENDSRWETAVNEVVQSGRKTKPIIPEMCFIYSEENVDYSP
PNAFLEEDGTSLLISCAKCFVRVHASCYGVPSHEVCDGWLCARCKRNAWTAECCLCNLRGGALKQTKNNQ
WAHVICAVAVPEVRFTNVPERTQIDVDRIPLQRLKLKCIFCRHRVKKVSGACIQCSYGRCPASFHVTCAH
AAGVLMEPDDWPYVVNITCFRHRVNSNAKSKTCEKAISVGQTVITKHRNTRYYSCRVIDVTSQTFYEVMF
DDGSFSRDTFPEDIVSRNCVKLGPPAEGEVIQVKWPDGKLYGAKYLGSNVAYMYQVEFEDGSQIAMKRED
IYTLDEELPKRVKARFSTASDMRFEDTFYGADVIQGERKRQRVLSSRLKNEYVDDPVYRTFLKSSFQKKC
QKRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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