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Report for CCDS47028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47028.1 Public Homo sapiens 4 FAM200B 24 110 108 CCDS HistoryNCBI Gene:285550Re-query CCDS DB by CCDS ID:47028.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47028.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000422728.3 ENSP00000393017.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000422728.3Link to Ensembl Protein Viewer:ENSP00000393017.2Re-query CCDS DB by Nucleotide ID:ENST00000422728Re-query CCDS DB by Protein ID:ENSP00000393017
Original member Current member NCBI NM_001145191.2 NP_001138663.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145191.2Link to Protein Sequence:NP_001138663.1Re-query CCDS DB by Nucleotide ID:NM_001145191Re-query CCDS DB by Protein ID:NP_001138663Link to BLAST:NP_001138663.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138663.1 657 P0CF97 657 100% 0 0

Chromosomal Locations for CCDS 47028.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 15686978 15688951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGGATCATTTCTTTATTAAAAGAAAGAGGAATAGTGAAGTGAAATATACAGAAGCATGTTCAAGTTCAT
CTGTTGAATCTGGAATTGTGAATAGTGACAATATTGAGAAAAATACTGACTCCAATCTGCAAACTTCAAC
TTCATTTGAGCCACATTTCAAAAAGAAAAAAGTAAGTGCAAGACGTTATAATGAAGATTACTTAAAATAT
GGCTTTATCAAATGTGAAAAACCCTTTGAAAATGACAGACCTCAGTGTGTTATTTGTAATAATATTCTTG
CGAATGAAAGCTTAAAACCTTCGAAATTAAAAAGGCACTTAGAAACTCAGCATGCTGAACTTATTGATAA
GCCTCTTGAATATTTTCAAAGAAAGAAAAAAGACATAAAGTTATCAACACAATTTCTTAGTTGTTCTACT
GCTGTTAGTGAGAAAGCCTTATTATCATCATATTTAGTTGCATATCGTGTGGCAAAAGAGAAAATAGCTA
ACACAGCTGCTGAAAAAATTATTCTTCCAGCATGTTTGGATATGGTGCGTACAATATTTGATGATAAATC
AGCTGATAAATTAAAAACTATACCTAATGATAACACAGTATCTCTTCGAATTTGTACTATTGCAGAACAT
TTAGAAACAATGCTTATTACTCGTTTACAGTCTGGTATAGATTTTGCAATCCAGCTTGATGAAAGCACTG
ATATTGGAAGCTGCACAACACTTTTAGTTTATGTCAGATATGCGTGGCAAGATGATTTTTTGGAGGATTT
TTTGTGTTTTTTAAATTTAACCTCACACCTAAGTGGATTAGATATTTTTACAGAATTAGAAAGGCGCATA
GTTGGCCAATATAAATTAAACTGGAAAAACTGTAAAGGAATTACAAGTGATGGCACAGCAACCATGACTG
GAAAACATAGCAGAGTAATTAAAAAATTACTAGAAGTTACTAATAATGGTGCTGTGTGGAATCATTGTTT
TATACATCGTGAAGGTTTAGCATCCAGAGAAATTCCACAGAATCTCATGGAGGTATTGAAAAATGCAGTG
AAAGTTGTTAATTTTATTAAAGGAAGCTCATTGAATAGCCGGCTTCTTGAAACATTTTGTTCAGAGATTG
GAACTAATCATACCCACTTACTATATCATACCAAAATTCGTTGGTTGTCTCAAGGGAAAATACTAAGCAG
GGTTTATGAGCTCAGGAATGAGATTCACTTTTTTCTCATTGAAAAAAAATCTCATTTGGCAAGTATTTTT
GAAGATGATACTTGGGTAACAAAATTGGCATATTTAACTGATATTTTTAGCATTCTTAATGAACTGAGTT
TAAAACTACAGGGGAAAAACAGTGATGTATTCCAACATGTTGAACGTATCCAGGGATTTCGAAAGACATT
ATTGTTATGGCAAGTAAGACTTAAAAGTAATCGTCCTAGCTATTACATGTTTCCAAGATTTTTGCAGCAT
ATTGAAGAGAATATTATTAATGAAAACATTTTGAAAGAAATAAAATTAGAGATATTGTTGCATCTCACTT
CTCTGTCTCAAACTTTTAACCATTTCTTTCCAGAAGAAAAATTTGAAACATTAAGGGAAAACAGTTGGGT
AAAAGATCCATTTGCTTTTCGACACCCTGAATCAATAATTGAGCTAAACTTGGTGCCTGAAGAAGAGAAT
GAATTATTGCAGCTTAGTTCTTCATATACATTGAAGAATGATTATGAAACCTTAAGTTTATCAGCATTTT
GGATGAAGGTAAAGGAAGACTTTCCATTGTTAAGTAGAAAGAGTGTCCTGCTATTGCTACCATTCACAAC
AACTAGTTTGTGTGAACTAGGGTTTTCCATCTTAACGCAGTTAAAAACAAAGGAAAGAAATGGGCTGAAT
TGTGCAGCAGTTATGCGGGTAGCATTATCTTCCTGTGTTCCAGACTGGAATGAACTTATGAACAGGCAAG
CACACCCATCATAG

Translation (657 aa):
MDHFFIKRKRNSEVKYTEACSSSSVESGIVNSDNIEKNTDSNLQTSTSFEPHFKKKKVSARRYNEDYLKY
GFIKCEKPFENDRPQCVICNNILANESLKPSKLKRHLETQHAELIDKPLEYFQRKKKDIKLSTQFLSCST
AVSEKALLSSYLVAYRVAKEKIANTAAEKIILPACLDMVRTIFDDKSADKLKTIPNDNTVSLRICTIAEH
LETMLITRLQSGIDFAIQLDESTDIGSCTTLLVYVRYAWQDDFLEDFLCFLNLTSHLSGLDIFTELERRI
VGQYKLNWKNCKGITSDGTATMTGKHSRVIKKLLEVTNNGAVWNHCFIHREGLASREIPQNLMEVLKNAV
KVVNFIKGSSLNSRLLETFCSEIGTNHTHLLYHTKIRWLSQGKILSRVYELRNEIHFFLIEKKSHLASIF
EDDTWVTKLAYLTDIFSILNELSLKLQGKNSDVFQHVERIQGFRKTLLLWQVRLKSNRPSYYMFPRFLQH
IEENIINENILKEIKLEILLHLTSLSQTFNHFFPEEKFETLRENSWVKDPFAFRHPESIIELNLVPEEEN
ELLQLSSSYTLKNDYETLSLSAFWMKVKEDFPLLSRKSVLLLLPFTTTSLCELGFSILTQLKTKERNGLN
CAAVMRVALSSCVPDWNELMNRQAHPS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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