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Report for CCDS52957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52957.1 Public Mus musculus 9 Rbms3 23 108 98 CCDS HistoryNCBI Gene:207181Re-query CCDS DB by CCDS ID:52957.1Re-query CCDS DB by GeneID:207181See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52957.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111773.9 ENSMUSP00000107403.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111773.9Link to Ensembl Protein Viewer:ENSMUSP00000107403.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111773Re-query CCDS DB by Protein ID:ENSMUSP00000107403
Original member Current member NCBI NM_001172123.1 NP_001165594.1 Accepted alive Link to Nucleotide Sequence:NM_001172123.1Link to Protein Sequence:NP_001165594.1Re-query CCDS DB by Nucleotide ID:NM_001172123Re-query CCDS DB by Protein ID:NP_001165594Link to BLAST:NP_001165594.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165594.1 431 Q8BWL5-1 431 100% 0 0

Chromosomal Locations for CCDS 52957.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 116578696 116578702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116582738 116582865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116586018 116586095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116627890 116627937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116636369 116636479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116678647 116678697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116681131 116681227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116695820 116695866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116719316 116719422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116805413 116805492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116822739 116822896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116959468 116959559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 117056737 117056795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 117109961 117110118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 117251727 117251801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGGCAAACGCCTGGATCAGCCACAAATGTACCCCCAGTACACGTACTACTGTCCTCAGTACCTCCAAA
CCAAGCAGTCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCCAGCACAAACAGCAGCAGCAA
CAGCAGCGGGGAACAGTTGAGTAAGACAAACCTATACATCCGAGGACTTCCACCAGGCACCACTGACCAG
GACCTCATCAAGCTATGTCAACCGTATGGAAAAATCGTATCCACAAAGGCAATTCTTGACAAGAATACGA
ATCAGTGCAAAGGTTATGGTTTTGTAGATTTTGATAGTCCTGCAGCCGCACAGAAAGCAGTGGCGTCCTT
GAAGGCAAATGGCGTGCAAGCACAGATGGCCAAGCAACAAGAGCAAGACCCTACGAATCTATACATCTCA
AACCTTCCCATCTCCATGGATGAGCAGGAGCTGGAGAACATGCTAAAGCCCTTTGGACACGTGATATCCA
CCAGAATCCTGAGGGATGCTAACGGAGTCAGCAGGGGCGTTGGCTTTGCCAGAATGGAGTCTACGGAAAA
ATGTGAAGTGGTGATTCAACATTTTAATGGAAAATATCTGAAAACACCACCAGGCATCCCAGCCCCCAGT
GAGCCTTTGCTGTGCAAGTTTGCTGACGGAGGACAGAAGAAGAGACAGGGTCAGAGCAAGCACACCCAGA
ACGGGAGGCCATGGCCCAGAGAAGGAGAGGCTGGCATGGCTCTGACCTATGACCCCACAGCTGCCCTACA
GAACGGATTTTATTCTTCACCGTACAGTCTCGCAACCAACCGCATGATCCCACAGACATCTATCACGCCC
TTCATTGCCGCTTCCCCTGTCTCCACATACCAGGTCCAGAGCACGTCATGGACGCCACACCTGCCATACA
TTATGCAACCAACAGGTGCTGTGATCACACCCGCCGTGGACCACCCCATGTCAATGCAGCCAACTAACAT
CGTGGGTCCCCTGACGCAGCAGATGAACCATCTTTCCCTGGGGACAGCAGGAACGATTCAATCCCAAGAC
AGAATTATGGTACTTCACCAGCTGTTATGTCAGTATATGACTGCTGCTCCTATGCAAGGGACCTACATTC
CCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAAGGTGTTGTTGCTGATACCTCTCCCCAGAC
GGTGGCCCCCTCATCCCAGGACAGCAGTGGTCAGCAGCAACAGTTAGCAGTGGACACACCCAGTGAACAC
GCACCGGCATACTCCTTCCAACAGTCCAAACCATAG

Translation (431 aa):
MGKRLDQPQMYPQYTYYCPQYLQTKQSYAPAPHPMAPPSPSTNSSSNSSGEQLSKTNLYIRGLPPGTTDQ
DLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYIS
NLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPS
EPLLCKFADGGQKKRQGQSKHTQNGRPWPREGEAGMALTYDPTAALQNGFYSSPYSLATNRMIPQTSITP
FIAASPVSTYQVQSTSWTPHLPYIMQPTGAVITPAVDHPMSMQPTNIVGPLTQQMNHLSLGTAGTIQSQD
RIMVLHQLLCQYMTAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDSSGQQQQLAVDTPSEH
APAYSFQQSKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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