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Report for CCDS27991.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27991.1 Public Mus musculus 16 Ppm1f 23 108 98 CCDS HistoryNCBI Gene:68606Re-query CCDS DB by CCDS ID:27991.1Re-query CCDS DB by GeneID:68606See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27991.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027373.11 ENSMUSP00000027373.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027373.11Link to Ensembl Protein Viewer:ENSMUSP00000027373.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000027373Re-query CCDS DB by Protein ID:ENSMUSP00000027373
Original member Current member NCBI NM_176833.4 NP_789803.1 Accepted alive Link to Nucleotide Sequence:NM_176833.4Link to Protein Sequence:NP_789803.1Re-query CCDS DB by Nucleotide ID:NM_176833Re-query CCDS DB by Protein ID:NP_789803Link to BLAST:NP_789803.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789803.1 452 Q8CGA0 452 100% 0 0

Chromosomal Locations for CCDS 27991.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 16903389 16903591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16910939 16911081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16914034 16914236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16915160 16915348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16917660 16917803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16922463 16922556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16923640 16924022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGGCCTCTGGAGCCGCACAGAACAGCAGCCAGATGGCCTGTGACAGTGAGATCCCAGGCTTCCTGGACG
CATTCCTCCAAGACTTCCCAGCCCCACTGAGCCTGGAGAGCCCTTTGCCATGGAAGGTCCCAGGGACAGT
CCTGAGCCAGGAAGAAGTGGAGGCTGAGCTGATTGAGCTGGCATTGGGCTTCCTGGGCAGCAGGAACGCT
CCCCCATCGTTTGCTGTGGCTGTGACCCACGAGGCAATTTCCCAGCTGCTGCAGACAGACCTTTCTGAAT
TTAAGAGGTTGCCTGAACAAGAGGAGGAGGAGGAAGAGGAGGAAGAAGAGAAAGCCCTCGTGACCTTACT
AGATGCCAAAGGCCTGGCACGGAGCTTCTTCAACTGCCTTTGGAAAGTATGTAGCCAGTGGCAGAAGCAG
GTGCCGTTGACTGCCCAGGCCCCTCAGTGGCAGTGGCTGGTCTCTATCCATGCCATCCGGAACACACGAC
GCAAGATGGAGGACCGACACGTGTCCCTTCCTGCTTTCAACCATCTCTTCGGCTTGTCTGACTCTGTGCA
CCGTGCCTACTTTGCTGTGTTTGATGGTCATGGAGGCGTGGATGCAGCAAGGTATGCCTCTGTCCACGTG
CATACCAATGCTTCTCACCAGCCAGAGCTGCGCACAAACCCTGCAGCAGCTCTCAAAGAAGCCTTCCGGC
TCACCGATGAGATGTTTCTCCAGAAAGCCAAGCGAGAGCGACTGCAGAGCGGTACCACGGGTGTGTGTGC
ACTCATCGCGGGAGCAGCCCTGCATGTTGCCTGGCTTGGAGACTCCCAGGTCATCCTGGTACAGCAAGGA
CGGGTAGTGAAGCTGATGGAGCCGCACAAACCGGAGCGACAGGATGAGAAAGCACGAATTGAAGCCCTGG
GTGGCTTTGTTTCTCTCATGGACTGTTGGAGAGTCAACGGGACCCTGGCAGTGTCTAGAGCCATTGGGGA
TGTCTTCCAGAAGCCCTATGTGTCTGGGGAGGCCGATGCAGCATCCAGAGAGCTAACGGGCTCAGAGGAC
TACCTGTTGCTTGCTTGTGATGGTTTCTTCGATGTTGTCCCCCACCATGAAGTCACGGGTCTCGTCCATG
GCCACTTGCTCAGGCACAAGGGCAATGGGATGCGTATTGCTGAGGAGCTGGTGGCTGTGGCCCGTGACCG
GGGCTCCCATGACAACATTACAGTCATGGTGGTCTTCCTTAGGGAGCCCCTGGAGCTGCTAGAGGGTGGA
GTCCAGGGGACAGGGGATGCCCAGGCAGATGTAGGAAGCCAGGACTTGTCCACTGGCCTCTCAGAACTTG
AGATCAGTAATACCTCACAGAGAAGCTAA

Translation (452 aa):
MASGAAQNSSQMACDSEIPGFLDAFLQDFPAPLSLESPLPWKVPGTVLSQEEVEAELIELALGFLGSRNA
PPSFAVAVTHEAISQLLQTDLSEFKRLPEQEEEEEEEEEEKALVTLLDAKGLARSFFNCLWKVCSQWQKQ
VPLTAQAPQWQWLVSIHAIRNTRRKMEDRHVSLPAFNHLFGLSDSVHRAYFAVFDGHGGVDAARYASVHV
HTNASHQPELRTNPAAALKEAFRLTDEMFLQKAKRERLQSGTTGVCALIAGAALHVAWLGDSQVILVQQG
RVVKLMEPHKPERQDEKARIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGSED
YLLLACDGFFDVVPHHEVTGLVHGHLLRHKGNGMRIAEELVAVARDRGSHDNITVMVVFLREPLELLEGG
VQGTGDAQADVGSQDLSTGLSELEISNTSQRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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