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Report for CCDS29262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29262.1 Public Mus musculus 18 Marchf3 23 108 98 CCDS HistoryNCBI Gene:320253Re-query CCDS DB by CCDS ID:29262.1Re-query CCDS DB by GeneID:320253See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29262.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102912.7 ENSMUSP00000099976.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102912.7Link to Ensembl Protein Viewer:ENSMUSP00000099976.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102912Re-query CCDS DB by Protein ID:ENSMUSP00000099976
Original member NCBI NM_177115.2 NP_796089.1 Updated not alive Link to Nucleotide Sequence:NM_177115.2Link to Protein Sequence:NP_796089.1Re-query CCDS DB by Nucleotide ID:NM_177115Re-query CCDS DB by Protein ID:NP_796089
Current member NCBI NM_177115.3 NP_796089.1 Accepted alive Link to Nucleotide Sequence:NM_177115.3Link to Protein Sequence:NP_796089.1Re-query CCDS DB by Nucleotide ID:NM_177115Re-query CCDS DB by Protein ID:NP_796089Link to BLAST:NP_796089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796089.1 218 Q8BRX9 218 100% 0 0

Chromosomal Locations for CCDS 29262.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 56762515 56762568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56783019 56783228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56807664 56807868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56811832 56812019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGACAACCAGTCGCTGCAGTCACCTGCCCGAAGTCTTGCCAGACTGCACCAGCTCAGCCGCGCCTGTGG
TGAAGACGGTGGAGGATTGTGGCAGCCTAGTGAATGGGCAGCCACAGTATGTCATGCAAGTTTCAGCCAA
GGACGGGCAGCTGCTGTCAACAGTAGTGCGGACTCTTGCCACCCAGAGCCCCTTCAATGACCGGCCAATG
TGCAGGATCTGCCATGAGGGAAGCAGCCAAGAGGACTTACTCTCTCCGTGTGAATGTACTGGGACCTTGG
GGACCATCCATCGGAGCTGCCTGGAGCACTGGCTGTCATCCTCAAATACCAGCTACTGTGAACTCTGCCA
CTTCAGGTTTGCAGTGGAGCGCAAACCCAGGCCGTTAGTGGAGTGGCTTAGAAACCCTGGCCCCCAGCAT
GAGAAGCGGACTCTGTTTGGAGATATGGTGTGCTTCTTGTTTATAACGCCCCTGGCTACCATCTCAGGCT
GGCTGTGCCTGCGGGGGGCCGTGGATCACCTGCACTTTAGTAGCCGGCTGGAGGCCGTCGGACTCATTGC
CCTCACTGTGGCACTCTTCACCATTTACCTCTTCTGGACACTAAGGCGTTATGGACACCAAAGTAAACCA
TTTTGGAATCAGTCGAGCAGAAGCTGA

Translation (218 aa):
MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPM
CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPLVEWLRNPGPQH
EKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRLEAVGLIALTVALFTIYLFWTLRRYGHQSKP
FWNQSSRS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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