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Report for CCDS26235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26235.1 Public Mus musculus 13 Idi2 23 108 98 CCDS HistoryNCBI Gene:320581Re-query CCDS DB by CCDS ID:26235.1Re-query CCDS DB by GeneID:320581See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26235.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038598.2 ENSMUSP00000036621.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038598.2Link to Ensembl Protein Viewer:ENSMUSP00000036621.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000038598Re-query CCDS DB by Protein ID:ENSMUSP00000036621
Original member NCBI NM_177197.4 NP_796171.1 Updated not alive Link to Nucleotide Sequence:NM_177197.4Link to Protein Sequence:NP_796171.1Re-query CCDS DB by Nucleotide ID:NM_177197Re-query CCDS DB by Protein ID:NP_796171
Current member NCBI NM_177197.5 NP_796171.1 Accepted alive Link to Nucleotide Sequence:NM_177197.5Link to Protein Sequence:NP_796171.1Re-query CCDS DB by Nucleotide ID:NM_177197Re-query CCDS DB by Protein ID:NP_796171Link to BLAST:NP_796171.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796171.1 227 Q8BFZ6 227 100% 0 0

Chromosomal Locations for CCDS 26235.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 8956811 8956952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 8957797 8957889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 8958443 8958573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 8959115 8959432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGTTCCAGGCAAGCAAAACTCACCTTGATGAACTCCAGCTCAAACGTCTGGAGGAGATGTGCATTGTCA
TTGACAAGCAGGATCAGATCATTGGGGCTGACACCAAGAAGAACTGTCACCTCATGGAAAACATCAACAA
GGGTCTGCTACACAGAGCCTTCAGTGTGGTCCTTTTCAACATGAAAAACGAGCTCTTGGTCCAGCAGAGA
GCAGATGCCAAGTACACATTTCCAGGACATTTTACAGACTCCTGTTCTAGTCACCCTCTGTATGTGCCTG
AGGAGCTGGAAGAGAAGGATGCCTTGGGAGTGAGGAGGGCAGCCCTAAGACGTCTGCAGGCTGAGCTGGG
CATCTCCCAGGACCAGATTTCCATAAAGGACATAATCTTCATGACCCGAAAATACCACAAGTGTCAGTCA
GATGCTATCTGGGGAGAACATGAGATTGGCTACCTTCTGTTGGTGAGAAAAGATCTTATGCTAAACCCAG
ATACCAGGGAAGTGAGACGCTGCTGCTACATGAGCCAGAAGGACGTGCAGGAGCTACTGGACAGGGAGGC
CCGAGGAGAAGAAAAGATCACCCCTTGGTTCAGAAGCATGGTAGAGGATTTCCTGTTCTCTTGGTGGCCT
CATTTAGAGGATGTGTCTTCATTCGTGGAGCCTGACAAGATATATGGACTGTGA

Translation (227 aa):
MFQASKTHLDELQLKRLEEMCIVIDKQDQIIGADTKKNCHLMENINKGLLHRAFSVVLFNMKNELLVQQR
ADAKYTFPGHFTDSCSSHPLYVPEELEEKDALGVRRAALRRLQAELGISQDQISIKDIIFMTRKYHKCQS
DAIWGEHEIGYLLLVRKDLMLNPDTREVRRCCYMSQKDVQELLDREARGEEKITPWFRSMVEDFLFSWWP
HLEDVSSFVEPDKIYGL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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