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Report for CCDS54940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54940.1 Public Homo sapiens 5 ZNF300 24 110 108 CCDS HistoryNCBI Gene:91975Re-query CCDS DB by CCDS ID:54940.1Re-query CCDS DB by GeneID:91975See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54940.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000446148.6 ENSP00000397178.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446148.6Link to Ensembl Protein Viewer:ENSP00000397178.2Re-query CCDS DB by Nucleotide ID:ENST00000446148Re-query CCDS DB by Protein ID:ENSP00000397178
Original member Current member NCBI NM_001172831.3 NP_001166302.1 Accepted alive Link to Nucleotide Sequence:NM_001172831.3Link to Protein Sequence:NP_001166302.1Re-query CCDS DB by Nucleotide ID:NM_001172831Re-query CCDS DB by Protein ID:NP_001166302Link to BLAST:NP_001166302.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166302.1 620 Q96RE9-3 620 100% 0 0

Chromosomal Locations for CCDS 54940.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150895424 150896973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150898062 150898184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150898428 150898554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150903141 150903182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150903329 150903349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGGTGCCTGCTGAGACTTCTTCATCTGGCCTTTTGGAAGAGCAAAAAATGATGAAGTCCCAGGGGTTAG
TATCATTCAAGGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCAGCAACTTGACCCTTCTCAGAGGAC
CCTGTACAGGGATGTGATGCTGGAGAACTACAGCCACCTGGTCTCAATGGGGTATCCAGTTTCCAAACCA
GATGTCATCTCCAAGTTGGAACAAGGAGAAGAGCCATGGATCATAAAGGGAGACATATCAAATTGGATCT
ATCCAGATGAATATCAGGCAGATGGGAGACAAGACAGGAAGAGTAACCTTCACAACTCCCAGTCATGTAT
TTTGGGGACAGTTTCCTTCCATCATAAGATACTGAAAGGAGTCACAAGGGATGGTTCATTGTGCTCCATT
TTAAAAGTCTGTCAAGGTGATGGTCAGCTGCAGAGATTTCTAGAGAATCAAGACAAACTCTTCAGGCAGG
TCACATTTGTTAACAGCAAAACAGTGACTGAGGCATCAGGGCATAAATATAATCCACTGGGGAAAATATT
TCAAGAGTGCATAGAAACAGATATATCAATACAGAGATTCCATAAATATGATGCTTTTAAAAAGAACTTA
AAACCAAATATTGACCTACCGAGTTGTTATAAGAGCAATTCAAGAAAAAAACCTGATCAGAGTTTTGGAG
GTGGAAAATCATCTAGCCAGAGTGAGCCCAATTCTAATCTTGAGAAGATTCACAATGGAGTAATACCTTT
TGATGATAATCAGTGTGGAAACGTTTTTAGAAATACACAATCCCTTATTCAATATCAGAATGTGGAAACT
AAAGAGAAAAGCTGTGTATGTGTTACATGTGGAAAAGCCTTTGCTAAGAAGTCACAACTCATTGTACATC
AAAGAATTCATACTGGAAAGAAACCATATGATTGTGGTGCATGCGGAAAAGCCTTCAGTGAGAAGTTTCA
TCTTGTTGTACATCAGAGAACTCATACTGGGGAGAAACCTTATGATTGTTCTGAATGTGGAAAAGCCTTC
TCTCAGAAATCGTCCCTTATTATACATCAGAGAGTTCACACTGGGGAAAAACCCTATGAATGTAGTGAAT
GCGGGAAAGCCTTCTCCCAGAAATCACCCCTCATTATACATCAGAGAATACATACTGGGGAAAAACCCTA
TGAATGTAGAGAGTGTGGGAAGGCCTTTTCCCAGAAGTCACAGCTGATTATACACCACAGAGCTCATACT
GGAGAGAAGCCGTATGAGTGTACCGAATGTGGGAAAGCCTTCTGTGAGAAGTCCCACCTCATTATACATA
AAAGAATTCACACTGGTGAGAAACCCTACAAATGTGCTCAATGTGAGGAAGCCTTCAGCAGGAAGACAGA
ACTCATTACACATCAGTTAGTTCATACTGGGGAAAAACCTTATGAATGTACTGAATGTGGAAAGACATTC
TCCCGCAAGTCACAGCTCATCATACATCAGAGAACACATACTGGAGAAAAACCCTATAAATGTAGTGAAT
GTGGCAAAGCCTTCTGCCAGAAGTCACATCTCATTGGACATCAGAGAATTCACACAGGAGAAAAACCTTA
TATATGTACTGAATGTGGGAAAGCCTTCTCTCAGAAGTCCCACCTTCCGGGACACCAGCGAATTCATACA
GGAGAGAAACCTTACATATGTGCTGAATGTGGAAAGGCCTTTTCTCAGAAGTCAGACCTTGTTTTACATC
AGAGGATTCATACTGGGGAAAGACCCTATCAATGTGCTATATGTGGGAAGGCCTTCATCCAGAAGTCACA
ACTAACTGTACACCAGAGAATTCACACAGTGGTAAAATCATAA

Translation (620 aa):
MVPAETSSSGLLEEQKMMKSQGLVSFKDVAVDFTQEEWQQLDPSQRTLYRDVMLENYSHLVSMGYPVSKP
DVISKLEQGEEPWIIKGDISNWIYPDEYQADGRQDRKSNLHNSQSCILGTVSFHHKILKGVTRDGSLCSI
LKVCQGDGQLQRFLENQDKLFRQVTFVNSKTVTEASGHKYNPLGKIFQECIETDISIQRFHKYDAFKKNL
KPNIDLPSCYKSNSRKKPDQSFGGGKSSSQSEPNSNLEKIHNGVIPFDDNQCGNVFRNTQSLIQYQNVET
KEKSCVCVTCGKAFAKKSQLIVHQRIHTGKKPYDCGACGKAFSEKFHLVVHQRTHTGEKPYDCSECGKAF
SQKSSLIIHQRVHTGEKPYECSECGKAFSQKSPLIIHQRIHTGEKPYECRECGKAFSQKSQLIIHHRAHT
GEKPYECTECGKAFCEKSHLIIHKRIHTGEKPYKCAQCEEAFSRKTELITHQLVHTGEKPYECTECGKTF
SRKSQLIIHQRTHTGEKPYKCSECGKAFCQKSHLIGHQRIHTGEKPYICTECGKAFSQKSHLPGHQRIHT
GEKPYICAECGKAFSQKSDLVLHQRIHTGERPYQCAICGKAFIQKSQLTVHQRIHTVVKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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