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Report for CCDS34961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34961.1 Public Homo sapiens 8 GRINA 24 110 108 CCDS HistoryNCBI Gene:2907Re-query CCDS DB by CCDS ID:34961.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34961.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313269.5 ENSP00000314380.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000313269.5Link to Ensembl Protein Viewer:ENSP00000314380.5Re-query CCDS DB by Nucleotide ID:ENST00000313269Re-query CCDS DB by Protein ID:ENSP00000314380
Original member Current member EBI ENST00000395068.9 ENSP00000378507.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395068.9Link to Ensembl Protein Viewer:ENSP00000378507.4Re-query CCDS DB by Nucleotide ID:ENST00000395068Re-query CCDS DB by Protein ID:ENSP00000378507
Original member Current member NCBI NM_000837.2 NP_000828.1 Accepted alive Link to Nucleotide Sequence:NM_000837.2Link to Protein Sequence:NP_000828.1Re-query CCDS DB by Nucleotide ID:NM_000837Re-query CCDS DB by Protein ID:NP_000828Link to BLAST:NP_000828.1
Original member Current member NCBI NM_001009184.2 NP_001009184.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001009184.2Link to Protein Sequence:NP_001009184.1Re-query CCDS DB by Nucleotide ID:NM_001009184Re-query CCDS DB by Protein ID:NP_001009184Link to BLAST:NP_001009184.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000828.1 371 Q7Z429 371 100% 0 0
NP_001009184.1 371 Q7Z429 371 100% 0 0

Chromosomal Locations for CCDS 34961.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 143991224 143991602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143991692 143991804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143991878 143992078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143992245 143992373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143992465 143992608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143992692 143992841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGTCCCATGAAAAGAGTTTTTTGGTGTCTGGGGACAACTATCCTCCCCCCAACCCTGGATATCCGGGGG
GGCCCCAGCCACCCATGCCCCCCTATGCTCAGCCTCCCTACCCTGGGGCCCCTTACCCACAGCCCCCTTT
CCAGCCCTCCCCCTACGGTCAGCCAGGGTACCCCCATGGCCCCAGCCCCTACCCCCAAGGGGGCTACCCA
CAGGGTCCCTACCCCCAAGGGGGCTACCCACAGGGCCCCTACCCACAAGAGGGCTACCCACAGGGCCCCT
ACCCCCAAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTCCCCCCCAACCCCTATGGACAGCC
ACAGGTCTTCCCAGGACAAGACCCTGACTCACCCCAGCATGGAAACTACCAGGAGGAGGGTCCCCCATCC
TACTATGACAACCAGGACTTCCCTGCCACCAACTGGGATGACAAGAGCATCCGACAGGCCTTCATCCGCA
AGGTGTTCCTAGTGCTGACCTTGCAGCTGTCGGTGACCCTGTCCACGGTGTCTGTGTTCACTTTTGTTGC
GGAGGTGAAGGGCTTTGTCCGGGAGAATGTCTGGACCTACTATGTCTCCTATGCTGTCTTCTTCATCTCT
CTCATCGTCCTCAGCTGTTGTGGGGACTTCCGGCGAAAGCACCCCTGGAACCTTGTTGCACTGTCGGTCC
TGACCGCCAGCCTGTCGTACATGGTGGGGATGATCGCCAGCTTCTACAACACCGAGGCAGTCATCATGGC
CGTGGGCATCACCACAGCCGTCTGCTTCACCGTCGTCATCTTCTCCATGCAGACCCGCTACGACTTCACC
TCATGCATGGGCGTGCTCCTGGTGAGCATGGTGGTGCTCTTCATCTTCGCCATTCTCTGCATCTTCATCC
GGAACCGCATCCTGGAGATCGTGTACGCCTCACTGGGCGCTCTGCTCTTCACCTGCTTCCTCGCAGTGGA
CACCCAGCTGCTACTGGGGAACAAGCAGCTGTCCCTGAGCCCAGAAGAGTATGTGTTTGCTGCGCTGAAC
CTGTACACAGACATCATCAACATCTTCCTGTACATCCTCACCATCATTGGCCGCGCCAAGGAGTAG

Translation (371 aa):
MSHEKSFLVSGDNYPPPNPGYPGGPQPPMPPYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSPYPQGGYP
QGPYPQGGYPQGPYPQEGYPQGPYPQGGYPQGPYPQSPFPPNPYGQPQVFPGQDPDSPQHGNYQEEGPPS
YYDNQDFPATNWDDKSIRQAFIRKVFLVLTLQLSVTLSTVSVFTFVAEVKGFVRENVWTYYVSYAVFFIS
LIVLSCCGDFRRKHPWNLVALSVLTASLSYMVGMIASFYNTEAVIMAVGITTAVCFTVVIFSMQTRYDFT
SCMGVLLVSMVVLFIFAILCIFIRNRILEIVYASLGALLFTCFLAVDTQLLLGNKQLSLSPEEYVFAALN
LYTDIINIFLYILTIIGRAKE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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