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Report for CCDS18590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18590.1 Public Mus musculus 4 Slfnl1 23 108 98 CCDS HistoryNCBI Gene:194219Re-query CCDS DB by CCDS ID:18590.1Re-query CCDS DB by GeneID:194219See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18590.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062990.3 ENSMUSP00000050896.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062990.3Link to Ensembl Protein Viewer:ENSMUSP00000050896.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000062990Re-query CCDS DB by Protein ID:ENSMUSP00000050896
Original member NCBI NM_177570.3 NP_808238.1 Updated not alive Link to Nucleotide Sequence:NM_177570.3Link to Protein Sequence:NP_808238.1Re-query CCDS DB by Nucleotide ID:NM_177570Re-query CCDS DB by Protein ID:NP_808238
Current member NCBI NM_177570.4 NP_808238.1 Accepted alive Link to Nucleotide Sequence:NM_177570.4Link to Protein Sequence:NP_808238.1Re-query CCDS DB by Nucleotide ID:NM_177570Re-query CCDS DB by Protein ID:NP_808238Link to BLAST:NP_808238.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808238.1 410 Q8BHW9-1 410 100% 0 0

Chromosomal Locations for CCDS 18590.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 120533154 120533588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120534945 120535475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120535679 120535822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120536398 120536520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGAGCCTCAGAAAGAGATCAGCGCAGACACAGATGTGGGAGTCTCCTGTGATGTCCCAGGGGAAACAGT
CCCTCCTAGAGTTACCCCTAAAAGAGTCCCCACCCAAGGACTCTGGCCTCAAGGCGGTTCCCAGCACACA
TACTCTTTACGTGAGCCACCTAAACCCTCAGTTCTCTGTGCCCGTGCTTGCCTGCTTACTGCGAGACACC
CTAGAGCGGCTGGAGCTGCCAGTGGCCCGTGGCCAAATTGAGGTAGTGAGGCGGCCACGGAACACTTATG
CACTGGTACAGGTGGCTGCTCCCAAGGCAGTGCTGGCCTCCCTCCCCTGGCGCCTGCAGATGGCCTTGGA
GGAGCAACTAATCCTCAAAGAGCTCACAGCCCGGGGCAAGGAGCTGGTGTTGAGTGAGGCCTTGGAGTCC
TTACACCACAGGGAGCAGGAGGACAGTGGTCCAAGCCCAAGCCACAGCCCTGGACCAAGCCCTGGCCCCA
GCCCAGGCCTCAGGCACCCACCACTGCCCCAACTGGCAGACCCTTCCCCTATCTGGGGCTCGGCTGGCCG
TCGGCAGATCTCTCAGAACCGACCCAGTGGCGTGCGCTCTGACAGTGCCATTGTGCACCATAAGATCCTG
GGCCAGGAGCAGCTATTCCAGGGTGCCTTCCTTGGCAGCGAGACACGGAACATGGAGTTTAAGCGAGGCA
GCGGTGAGTACCTGAGCCTGGCTTTCAAGCACCATGTGCGGCGCTACGTATGTGCCTTTCTCAACAGTGA
GGGTGGCAGTCTGCTGGTAGGTGTCGAGGACAGTGGCCTGGTGCAGGGCATCCACTGCAGCCATCGTGAT
GAGGACCGTACACGCCTGCTGGTAGACTCCATCCTGCAGGGCTTCAAACCCCAGGTCTTTCCCGATGCCT
ACACCCTCACCTTCATCCCTGTCATAAGCACAACCACGACCAGCACACCTCTCAAGGTACTCCGCCTGAC
GGTGCACACTCCCAAGGCTCAGGGTGAGCCACAGCTGTACGAGACTGACCAGGGGGAGGTATTTCTAAGG
CGCGATGGGAGCATCCAGGGCCCACTGTCGGTTGGCGCCATCCAGGACTGGTGCAGGCAGAAGTGGGCGA
TGGAGCTGGGCAAGCTGGAAGAGAAGGTGAAGGTGTTAACGCTGGAAAAGGAGCAGCTTCAGCAGCAGCT
GAGGCAGCGCCAGCCACTGTCCTGCAGCTGCTGTGTCCTGTGA

Translation (410 aa):
MSLRKRSAQTQMWESPVMSQGKQSLLELPLKESPPKDSGLKAVPSTHTLYVSHLNPQFSVPVLACLLRDT
LERLELPVARGQIEVVRRPRNTYALVQVAAPKAVLASLPWRLQMALEEQLILKELTARGKELVLSEALES
LHHREQEDSGPSPSHSPGPSPGPSPGLRHPPLPQLADPSPIWGSAGRRQISQNRPSGVRSDSAIVHHKIL
GQEQLFQGAFLGSETRNMEFKRGSGEYLSLAFKHHVRRYVCAFLNSEGGSLLVGVEDSGLVQGIHCSHRD
EDRTRLLVDSILQGFKPQVFPDAYTLTFIPVISTTTTSTPLKVLRLTVHTPKAQGEPQLYETDQGEVFLR
RDGSIQGPLSVGAIQDWCRQKWAMELGKLEEKVKVLTLEKEQLQQQLRQRQPLSCSCCVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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