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Report for CCDS56891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56891.1 Public Mus musculus 13 Zfp874a 23 108 98 CCDS HistoryNCBI Gene:238692Re-query CCDS DB by CCDS ID:56891.1Re-query CCDS DB by GeneID:238692See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56891.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075255.5 ENSMUSP00000074735.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075255.5Link to Ensembl Protein Viewer:ENSMUSP00000074735.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000075255Re-query CCDS DB by Protein ID:ENSMUSP00000074735
Original member Current member NCBI NM_177712.4 NP_808380.1 Accepted alive Link to Nucleotide Sequence:NM_177712.4Link to Protein Sequence:NP_808380.1Re-query CCDS DB by Nucleotide ID:NM_177712Re-query CCDS DB by Protein ID:NP_808380Link to BLAST:NP_808380.1

Chromosomal Locations for CCDS 56891.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 67442220 67443334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67448821 67448916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67449350 67449476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67451512 67451517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGGAGGAAATGCTGTCCTTCTGGGATGTGGCCATTGATTTTTCTCCAGAAGAGAAAGAATGCCTGGAGC
CTGCTCAGTGGGATCTGTACAGGGATGTGATGCTGGAGAATTTCAGCCACCTTGATTTCCTGGGTCTTGC
TGTTGCTAAACCATACTTGGTAACATTTCTGGAGCAAAACCAAGGATCTTCGGGTGTGAAAAGCCAAACA
TCAGCCACCATTCCTCCAGGAACAACAGGCAATGAATTTAACAATCACAATGAGGCCATTGATCACAGCT
CTCTAAGTATGCAATGCCAGAGAATTCATACAGGAGAGGAACCCTACTACTTTGAAGACTGTGGTAAGGC
CCTTAGTTCTCAGGCAACACTTTCTGTACTCCAGGGACATTTTATTGGCGACAAACCCTACAAGTGTAGA
GAATGTCATAAAACTCTTAGTAGTCGCTCATCACTTTTAATACACCAGAAATATCACACTGATGAGAAAA
CCTACAAGTGTGAAAAATGTGGCAAAGGGTTTTTCCGTTCCTCAGATCTTCAGCATCATCAAAAAATTCA
TACTGGAGAGAAACCATACAAATGTGAAGAGTGTGACAAAGCCTTTCTTCATCACTCATATCTTAGGAAA
CACCAGGCAATTCATACTGGAGAGAAACCCTACAAGTGTGAAGAGTGTGGAAATTCATTTTACTATCCTG
CAATGCTGAAGCAACATCAAAGAATTCATTCTGGAGAGAAACTTGACAAGTGTGAAGAATGTGGGAAAGT
ATTTTCCTCTGCTTTCTTTCTTAACCAGCATAAAGGAATTGATTCCGGAGAGAAAAGGTACAAGTGTCAA
GAATGTGGCAAATCCTTTTGCTATCGTTCATATCTTAGGGAACATTATAGAATGCATTCTGGAGAGTATC
CCTACAAGTGTGAAGAATGTGGCAAAGGGTTTTCCCGTTCCTCAAAGCTTCAGGAACATCAAACAATTCA
TACTGGAGTTAAACCTTACAAGTGTGAAGAGTGTGGGAAATGTTTTTCCTCTTTTACGTCCCTTAAAAGA
CATCAAATCATCCATTCTGAAGATACTCCCCATGAGTGTGTAGAATGCGGCAAAAGGTTTTCTAGTTCTT
CCCGCCTTCAGGAACATCAGAAAATTCACATTGAAGAGAAACCCTACAAATGTGAAGAATGTGACAAAGC
CTTTCTTTATCACTCGTTTCTTAGGAGACACAGAGCAGTTCATACTAGAGAGAAACCCTACACGTGTGAA
AAGTGTGGGAAATGTTTTTCTTCCTTTACATCCCTGAAAAGACATCAAATCCATTCCATAGACATTTCCC
ATGAGTGTGTATAA

Translation (447 aa):
MEEMLSFWDVAIDFSPEEKECLEPAQWDLYRDVMLENFSHLDFLGLAVAKPYLVTFLEQNQGSSGVKSQT
SATIPPGTTGNEFNNHNEAIDHSSLSMQCQRIHTGEEPYYFEDCGKALSSQATLSVLQGHFIGDKPYKCR
ECHKTLSSRSSLLIHQKYHTDEKTYKCEKCGKGFFRSSDLQHHQKIHTGEKPYKCEECDKAFLHHSYLRK
HQAIHTGEKPYKCEECGNSFYYPAMLKQHQRIHSGEKLDKCEECGKVFSSAFFLNQHKGIDSGEKRYKCQ
ECGKSFCYRSYLREHYRMHSGEYPYKCEECGKGFSRSSKLQEHQTIHTGVKPYKCEECGKCFSSFTSLKR
HQIIHSEDTPHECVECGKRFSSSSRLQEHQKIHIEEKPYKCEECDKAFLYHSFLRRHRAVHTREKPYTCE
KCGKCFSSFTSLKRHQIHSIDISHECV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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