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Report for CCDS49475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49475.1 Public Mus musculus 14 Or11g27 23 108 98 CCDS HistoryNCBI Gene:219019Re-query CCDS DB by CCDS ID:49475.1Re-query CCDS DB by GeneID:219019See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49475.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071294.2 ENSMUSP00000071263.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071294.2Link to Ensembl Protein Viewer:ENSMUSP00000071263.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000071294Re-query CCDS DB by Protein ID:ENSMUSP00000071263
Original member Current member EBI ENSMUST00000215793.1 ENSMUSP00000150946.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215793.1Link to Ensembl Protein Viewer:ENSMUSP00000150946.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215793Re-query CCDS DB by Protein ID:ENSMUSP00000150946
Original member Current member NCBI NM_001177508.1 NP_001170979.1 Accepted alive Link to Nucleotide Sequence:NM_001177508.1Link to Protein Sequence:NP_001170979.1Re-query CCDS DB by Nucleotide ID:NM_001177508Re-query CCDS DB by Protein ID:NP_001170979Link to BLAST:NP_001170979.1

Chromosomal Locations for CCDS 49475.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50533414 50534349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAAAACCCTCAGCAGCCCCAGCAATTCCAGCACCATCACAGGCTTCATCCTTTTGGGCTTCCCCTGCC
CCAGGGAGGGGCAAATCCTTCTCTTTGTGATCTTCTTCGTTGTCTACCTACTCATCCTCATGGGCAACGC
TTCCATCATCTGTGCTGTGTACTGTGATCAGAGACTCCACACCCCCATGTACCTCCTGCTGGCCAACTTC
TCCTTCCTGGAAATCTGGTATGTCACTTCCACAGTCCCCAACATGTTGGCCAACTTCCTCTCTGACAACA
AGATCATTTCCTTCGCTGGATGCTTCCTGCAGTTCTATTTCTTCTTCTCCTTTGGTTCTACAGAATGCTT
TTTCCTGGCAGTCATGGCATTTGATCGATACCTTGCCATCTGTAGGCCACTACATTATCCTTCTCTCATG
ACTAGGCGCCTCTGCAACATCCTTGTGATCAGTTGCTGGGTGCTTGGTTTCCTCTGGTTCCCTGTACCCA
TCATCATCATCTCCCAGATGTCCTTCTGTGGGTCCAGAATTATAGACCACTTCCTGTGTGACCCAGGTCC
TCTTTTGGCCCTTGCCTGTTCCAGAGCCCCATTGATGGAGGTTTTCTGGACAATTATAATGTCTATTCTC
CTGGTTATTCCTTTCCTCTTCATCATGGGATCTTACATATTGGTCCTAAGAACTGTGTTCAGACTTCCTT
CAAGAGATGGACAAAAAAAGGCCTTCTCCACCTGTGGGTCACATGTGACTGTGGTTTCTCTTTTCTATGG
CTCAGTGATGATAATGTATATGAGCCCATCATCTGGACACGAAGCTGGAATGCAGAAGATTGTGACTCTG
TTTTATTCTGTGGGTACTCCATTACTTAATCCTGTGATATACAGTCTGAGGAACAAAGATATGAAAAATG
CCCTGCAAAAGATTTTAAGAACATAA

Translation (311 aa):
MKTLSSPSNSSTITGFILLGFPCPREGQILLFVIFFVVYLLILMGNASIICAVYCDQRLHTPMYLLLANF
SFLEIWYVTSTVPNMLANFLSDNKIISFAGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYPSLM
TRRLCNILVISCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRAPLMEVFWTIIMSIL
LVIPFLFIMGSYILVLRTVFRLPSRDGQKKAFSTCGSHVTVVSLFYGSVMIMYMSPSSGHEAGMQKIVTL
FYSVGTPLLNPVIYSLRNKDMKNALQKILRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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