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Report for CCDS48834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48834.1 Public Mus musculus 11 Bacc1 23 108 98 CCDS HistoryNCBI Gene:104457Re-query CCDS DB by CCDS ID:48834.1Re-query CCDS DB by GeneID:104457See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108576.9 ENSMUSP00000104216.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108576.9Link to Ensembl Protein Viewer:ENSMUSP00000104216.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108576Re-query CCDS DB by Protein ID:ENSMUSP00000104216
Original member Current member NCBI NM_001177601.1 NP_001171072.1 Accepted alive Link to Nucleotide Sequence:NM_001177601.1Link to Protein Sequence:NP_001171072.1Re-query CCDS DB by Nucleotide ID:NM_001177601Re-query CCDS DB by Protein ID:NP_001171072Link to BLAST:NP_001171072.1

Chromosomal Locations for CCDS 48834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70235404 70235468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70235696 70235800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70236024 70236211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70236877 70236978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70237531 70237625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70237784 70237804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGACGTCAGCGTCCACCAAGGTTGGAGAGATCTTCTCCGCGGCCGGCGCCGCCTTCACGAAGCTCGGGG
AGTTGACGATGCAGCTGCATCCAGTCTCGGACTCTTCCCCTGCCGGTGCCAAGTGGACGGAGACGGAGAT
AGAGATGCTGAGGGCTGCTGTGAAGCGCTTTGGGGACGATCTTAATCACATCAGCTGTGTCATCAAGGAA
CGGACAGTGGCTCAGATAAAGACCACTGTGAAGCGAAAAGTGTATGAAGACTCCGGCATCCCCCTTCCAG
CTGAGTCACCCAAGAAAGGACCCAAGAAGATGACGTCCGGTGTCCTCTCACCTCCAAACGCCCCTCCACC
CAGCAGCTCCAGTGTCCCTGAAGCTGGGGTTCCTCCCATAAAGAAACAGAAGGCTGATGTGACACTCAGT
GCTCTGAACGACTCCGACGCCAACAGTGACCTGGTGGATGTCGAAGGGCTAGGAGAAACTCCTCCAGCCA
AGAAACTCAACTTTGACCAGGACAGCCTGACCCTGGACTCTGGCCTCCTCACCACCTCCGCTGATGCTCC
TCTCCTCTCCTGCTGA

Translation (191 aa):
MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVSDSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCVIKE
RTVAQIKTTVKRKVYEDSGIPLPAESPKKGPKKMTSGVLSPPNAPPPSSSSVPEAGVPPIKKQKADVTLS
ALNDSDANSDLVDVEGLGETPPAKKLNFDQDSLTLDSGLLTTSADAPLLSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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