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Report for CCDS28513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28513.1 Public Mus musculus 17 Ube2i 23 108 98 CCDS HistoryNCBI Gene:22196Re-query CCDS DB by CCDS ID:28513.1Re-query CCDS DB by GeneID:22196See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28513.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049911.15 ENSMUSP00000055714.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049911.15Link to Ensembl Protein Viewer:ENSMUSP00000055714.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000049911Re-query CCDS DB by Protein ID:ENSMUSP00000055714
Original member Current member EBI ENSMUST00000172618.7 ENSMUSP00000134169.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172618.7Link to Ensembl Protein Viewer:ENSMUSP00000134169.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172618Re-query CCDS DB by Protein ID:ENSMUSP00000134169
Original member Current member EBI ENSMUST00000173084.7 ENSMUSP00000134261.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173084.7Link to Ensembl Protein Viewer:ENSMUSP00000134261.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173084Re-query CCDS DB by Protein ID:ENSMUSP00000134261
Original member Current member EBI ENSMUST00000174031.7 ENSMUSP00000134350.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174031.7Link to Ensembl Protein Viewer:ENSMUSP00000134350.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174031Re-query CCDS DB by Protein ID:ENSMUSP00000134350
Original member Current member EBI ENSMUST00000174001.7 ENSMUSP00000134450.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174001.7Link to Ensembl Protein Viewer:ENSMUSP00000134450.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174001Re-query CCDS DB by Protein ID:ENSMUSP00000134450
Original member Current member EBI ENSMUST00000173713.7 ENSMUSP00000134491.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173713.7Link to Ensembl Protein Viewer:ENSMUSP00000134491.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173713Re-query CCDS DB by Protein ID:ENSMUSP00000134491
Original member Current member NCBI NM_001177609.1 NP_001171080.1 Accepted alive Link to Nucleotide Sequence:NM_001177609.1Link to Protein Sequence:NP_001171080.1Re-query CCDS DB by Nucleotide ID:NM_001177609Re-query CCDS DB by Protein ID:NP_001171080Link to BLAST:NP_001171080.1
Original member Current member NCBI NM_001177610.1 NP_001171081.1 Accepted alive Link to Nucleotide Sequence:NM_001177610.1Link to Protein Sequence:NP_001171081.1Re-query CCDS DB by Nucleotide ID:NM_001177610Re-query CCDS DB by Protein ID:NP_001171081Link to BLAST:NP_001171081.1
Original member Current member NCBI NM_001357694.1 NP_001344623.1 Accepted alive Link to Nucleotide Sequence:NM_001357694.1Link to Protein Sequence:NP_001344623.1Re-query CCDS DB by Nucleotide ID:NM_001357694Re-query CCDS DB by Protein ID:NP_001344623Link to BLAST:NP_001344623.1
Original member Current member NCBI NM_011665.4 NP_035795.1 Accepted alive Link to Nucleotide Sequence:NM_011665.4Link to Protein Sequence:NP_035795.1Re-query CCDS DB by Nucleotide ID:NM_011665Re-query CCDS DB by Protein ID:NP_035795Link to BLAST:NP_035795.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171080.1 158 P63280 158 100% 0 0
NP_001171081.1 158 P63280 158 100% 0 0
NP_001344623.1 158 P63280 158 100% 0 0
NP_035795.1 158 P63280 158 100% 0 0

Chromosomal Locations for CCDS 28513.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25262428 25262491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25264766 25264845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25265119 25265228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25268541 25268613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25269192 25269275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25269403 25269468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGTCGGGGATCGCCCTCAGCCGCCTTGCGCAGGAAAGGAAAGCCTGGAGGAAGGACCACCCTTTTGGCT
TTGTAGCTGTCCCAACAAAGAACCCTGATGGCACAATGAACCTGATGAACTGGGAGTGCGCTATCCCTGG
AAAGAAGGGGACTCCATGGGAAGGAGGCTTGTTCAAGCTACGGATGCTTTTCAAAGATGACTATCCGTCC
TCACCACCAAAATGTAAATTTGAGCCCCCACTGTTTCATCCAAACGTGTATCCTTCTGGCACAGTGTGCC
TGTCCATCCTGGAGGAAGACAAGGACTGGAGGCCAGCTATCACCATCAAACAGATCTTATTAGGAATACA
AGAACTTCTAAATGAACCAAATATTCAAGACCCAGCTCAAGCAGAGGCCTACACAATTTACTGCCAAAAC
AGAGTGGAATATGAGAAAAGGGTCCGAGCACAAGCGAAGAAGTTTGCCCCCTCATAA

Translation (158 aa):
MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPS
SPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQN
RVEYEKRVRAQAKKFAPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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