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Report for CCDS28701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28701.1 Public Mus musculus 17 Mucl3 23 108 98 CCDS HistoryNCBI Gene:268949Re-query CCDS DB by CCDS ID:28701.1Re-query CCDS DB by GeneID:268949See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095467.3 ENSMUSP00000093120.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095467.3Link to Ensembl Protein Viewer:ENSMUSP00000093120.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095467Re-query CCDS DB by Protein ID:ENSMUSP00000093120
Original member Current member NCBI NM_001033366.3 NP_001028538.1 Accepted alive Link to Nucleotide Sequence:NM_001033366.3Link to Protein Sequence:NP_001028538.1Re-query CCDS DB by Nucleotide ID:NM_001033366Re-query CCDS DB by Protein ID:NP_001028538Link to BLAST:NP_001028538.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028538.1 500 Q3TNW5 500 100% 0 0

Chromosomal Locations for CCDS 28701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35636833 35636985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35637356 35638623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35643587 35643668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGGCTCAGCCGACCAGTGGCCTCTATTCTACTTTTGGCTTCTTCATCTGCCTCCTCTTCTTTCCGGCTT
CTTGGGAGGCAGGTGCTAACACATTTCAAGAACTTCAAAAGACTGGCGAACCTCCAAAATTCGATCACTT
ACTCCCTCTTACTCAGGGTCTTACTCATAGAGCCTCTTCTGACCAAAAAACCTCAAGGCAACATCCTCCA
GACCTCCCTGAGGCTACAGCAACCCAGAAGGCCAAAAACCAGTGCAACACCACTCGCCTTGTCAAACCAG
TGCACACACCTCTAGACAACGCCAAAGCCGCAGACTATGGAAACACCACTGTCCGTCATGAAATGCCTCC
GGCTTCAGAGAAGGATCTCAGCAGTCAAGGAAAACACCTAATGGCCAGGAATGAGCGCTCGGCTGACGAC
CCCAGATCCACTACCTCAGAGAACGGGTCAGATGGAAAACGTTTGACCTCAGCACCCAGGAGAAACACAA
GCTGTATGCCTTCAACAAGGCGAACCAGCTTAACGACGAAATCAGGTATGAGAGCGAGTCCCATGGGGGC
CAGTGCCAGCTTAAGGACCACCTCACAGAAGCCCACAACTTTCCATGTCTCAGAGCTCATTAGACAAAGT
TCTTCCCCAGTGTATGCCACAGAAACCCCAAGGACCTCATACAACACCCTAAAGACCCTAACAACATCAG
GACCTGAACATCACACAATTCCGTTTGCCTCAGACAAGTCTGTCCAGATAACTACAGAACACATTAAAGA
GGCCACATCAGCTAGCGAGATCACAAGAACCCAATCAACATTCACCAAGTATGAAGGAAAGACCAGCCCA
GCTAGTGAGAGTAGCTCGCAAGCCCAGGTGCTTCCCATAAAACATCATACCACATCGGCCAGTGAAAATA
CGATACCGGTCTCAGCAAAGTCCACACCATCTACCGAGAAAGCTACAAAACCCACAGCGAGTCCCACCGT
ATTCCAGAGGAAAACCATAGTAGCCACTAAGACTGTAAGAGCCACAAGAACCTCTGAGAGAACACCAGTA
TTCTTGGAGACCACACAACCAGCCAAAGCCACAGAAGACAAGTCATCTACTGTCCCTTCTCATGTCCATA
AAACGGAGACCATGCACCAAGGGACAGTTGGCTCTTTGACATCCAGAACGAACCTGGGACTCAGCACTTC
AGAAGCTCACTACCCCCAGCAGAGCACCCACAGCTTGCCTGGAGGCCTCCATGCTGCTGGGGAAACAGGG
GAGAATAATTCATTCCCTGTGTGGGCTATAGTTATTGTGATCCTTATGGCTGTGATTATCCTGCTGGTTT
TCATTGGCCTGATCCTTTTGGTCTCCTGTGCATCACGAGCACGCCATGTACTGACCCAGAACTCAGAGGA
GCCCGAGCCCCAGCCTGAAGACAAAGGGAGCCGCAATTCCTACCCAGTTTACCTGATGGAGCAGCAGAAT
TTGAATCTAAACCAGATCCCTTCCCCACCATGA

Translation (500 aa):
MAQPTSGLYSTFGFFICLLFFPASWEAGANTFQELQKTGEPPKFDHLLPLTQGLTHRASSDQKTSRQHPP
DLPEATATQKAKNQCNTTRLVKPVHTPLDNAKAADYGNTTVRHEMPPASEKDLSSQGKHLMARNERSADD
PRSTTSENGSDGKRLTSAPRRNTSCMPSTRRTSLTTKSGMRASPMGASASLRTTSQKPTTFHVSELIRQS
SSPVYATETPRTSYNTLKTLTTSGPEHHTIPFASDKSVQITTEHIKEATSASEITRTQSTFTKYEGKTSP
ASESSSQAQVLPIKHHTTSASENTIPVSAKSTPSTEKATKPTASPTVFQRKTIVATKTVRATRTSERTPV
FLETTQPAKATEDKSSTVPSHVHKTETMHQGTVGSLTSRTNLGLSTSEAHYPQQSTHSLPGGLHAAGETG
ENNSFPVWAIVIVILMAVIILLVFIGLILLVSCASRARHVLTQNSEEPEPQPEDKGSRNSYPVYLMEQQN
LNLNQIPSPP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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