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Report for CCDS16151.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16151.2 Public Mus musculus 2 Agps 23 108 98 CCDS HistoryNCBI Gene:228061Re-query CCDS DB by CCDS ID:16151.2Re-query CCDS DB by GeneID:228061See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16151.2
The coding region has been updated to extend the N-terminus. The update changes the protein length from 645 aa to 671 aa, but the splice sites are unaffected. The upstream in-frame start codon has a weak Kozak signal but is reasonably well-conserved. This extension is supported by homologous model proteins, including human EAX11058.1, rat EDL79213.1, rabbit XP_002712353.1 and cow XP_869738.3.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16151.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047232.13 ENSMUSP00000041967.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047232.13Link to Ensembl Protein Viewer:ENSMUSP00000041967.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047232Re-query CCDS DB by Protein ID:ENSMUSP00000041967
Original member Current member NCBI NM_172666.3 NP_766254.2 Accepted alive Link to Nucleotide Sequence:NM_172666.3Link to Protein Sequence:NP_766254.2Re-query CCDS DB by Nucleotide ID:NM_172666Re-query CCDS DB by Protein ID:NP_766254Link to BLAST:NP_766254.2

Chromosomal Locations for CCDS 16151.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 75832213 75832511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75851494 75851583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75852722 75852812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75854170 75854290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75854531 75854605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75857017 75857088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75858899 75858978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75861934 75862014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75866747 75866872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75868305 75868413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75877471 75877598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75888116 75888167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75891792 75891868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75894045 75894157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75900182 75900251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75902918 75902979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75904859 75904948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75909601 75909700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75911621 75911678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75925922 75926043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2016 nt):
ATGGTCGCGCGGGGCGCCGCTCTGAGTGACCTTTCACCCGAGCCCAGCGGCCTCGGGCGGCGGCACAAGG
CGGAAGCCATGGCGGAGGCGGCGGCGGGCGAGGCGGGCGCGAGCGAGCGGGACCCAGACGCGGGCCGCGC
GCGCCGGCGGCTGCGGGTTCTGTCGGGCCATCTGCTGGGCCGGCCCCAGGAGGCTCCGAGTACCAATGAG
TGCAAAGCGCGGAGAGCCGCGTCGGCGGCCGGGGCGTCGCCCGCCGCTACTCCTGCCGCACCAGAGTCGG
GCACCATCCCCAAGAAGCGGCAAGAAGTTATGAAATGGAATGGATGGGGCTACAATGATTCCAAGTTCTT
ATTGAATAAGAAGGGCCAGGTTGAGCTGACTGGGAAAAGGTACCCACTTAGTGGCTTGGTTTTACCAACT
TTGAGAGACTGGATCCAAAACACCCTTGGAGTAAGTCTGGAGCATAAAACTACCTCTAAAACATCCATAA
ATCCTAGTGAAGCACCTCCTTCTATTGTGAATGAAGATTTCCTTCAGGAACTTAAAGAAGCTCGGATTTC
CTACTCACAGGAAGCAGATGATCGTGTGTTTAGAGCTCACGGTCATTGTCTTCACGAGATATTTTTGCTC
AGAGAAGGGATGTTTGAGCGGATTCCTGATATAGTTGTATGGCCAACATGTCATGATGATGTAGTTAAGA
TTGTGAATCTAGCTTGCAAATATAACCTTTGTATCATACCAATTGGTGGAGGAACAAGTGTGTCCTATGG
CTTGATGTGTCCTGCAGACGAGACAAGAACAATAATTTCTTTGGACACTTCACAAATGAACCGGATTCTC
TGGGTTGATGAGAACAATCTGACAGCTCACGTAGAGGCTGGGATAACAGGACAAGATTTGGAAAGACAGC
TTAAAGAAAGTGGTTATTGTACAGGTCATGAACCGGACTCCCTGGAATTCAGCACCGTGGGAGGATGGAT
ATCTACTCGAGCGTCAGGCATGAAGAAAAATATCTATGGCAATATTGAGGACCTGGTGGTTCATATGAAA
ATGGTAACACCTAGAGGTGTAATAGAGAAAAGCTCCCAAGGACCTCGTATGTCAACGGGCCCTGATATCC
ATCACTTCATTATGGGATCTGAAGGAACTCTTGGTGTAATAACAGAAGCTACAATAAAGATCAGACCAAC
CCCTGAGTACCAGAAGTACGGTTCGGTGGCTTTCCCTAACTTTGAACAAGGTGTAGCCTGTTTAAGAGAA
ATTGCAAAGCAGAGATGTGCTCCTGCATCTATCCGCCTCATGGACAACCAGCAGTTCCAGTTTGGTCATG
CTCTTAAACCTCAGGTCTCTTCTATTTTTACATCATTTTTGGATGGATTAAAAAAGTTTTATATTACAAA
GTTTAAAGGATTTGATCCAAATCAAATAAGTGTAGCCACATTACTGTTCGAGGGAGACCGTGAGAAGGTT
CTTCAGCACGAAAAACAAGTGTATGACATCGCAGCAAAATTTGGTGGTCTGGCTGCTGGAGAAGATAACG
GTCAGAGGGGTTATTTGCTGACTTATGTCATTGCATATATTCGTGATTTGGGTTTGGAATACTATGTAAT
AGGAGAATCTTTTGAGACTTCTGCTCCTTGGGACAGGGTTATAGATCTGTGTAGAAATGTAAAGGAGAGG
ATAAGAAGGGAATGCAAAGAAAGGGGAGTTCAGTTCGCACCTCTTTCTACGTGCAGGGTGACACAGACTT
ATGATGCAGGTGCATGTATCTACTTCTATTTTGCCTTTAACTACAGGGGAATTAGTGACCCACTGACCGT
GTTTGAACACACTGAGGCAGCTGCTAGAGAGGAAATCCTTGCCAATGGAGGGAGCCTGTCACATCACCAT
GGAGTGGGCAAGATACGAAAGCAGTGGCTAAAGGAGAGCATCTCTGATGTCGGCTTTGGAATGCTAAAGT
CGGTCAAGGAGTATGTGGACCCAAGTAACATCTTTGGAAACAGAAACCTTTTATAA

Translation (671 aa):
MVARGAALSDLSPEPSGLGRRHKAEAMAEAAAGEAGASERDPDAGRARRRLRVLSGHLLGRPQEAPSTNE
CKARRAASAAGASPAATPAAPESGTIPKKRQEVMKWNGWGYNDSKFLLNKKGQVELTGKRYPLSGLVLPT
LRDWIQNTLGVSLEHKTTSKTSINPSEAPPSIVNEDFLQELKEARISYSQEADDRVFRAHGHCLHEIFLL
REGMFERIPDIVVWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRIL
WVDENNLTAHVEAGITGQDLERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIEDLVVHMK
MVTPRGVIEKSSQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLRE
IAKQRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQISVATLLFEGDREKV
LQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGESFETSAPWDRVIDLCRNVKER
IRRECKERGVQFAPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLTVFEHTEAAAREEILANGGSLSHHH
GVGKIRKQWLKESISDVGFGMLKSVKEYVDPSNIFGNRNLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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