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Report for CCDS54350.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54350.1 Public Homo sapiens 2 VIT 24 110 108 CCDS HistoryNCBI Gene:5212Re-query CCDS DB by CCDS ID:54350.1Re-query CCDS DB by GeneID:5212See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54350.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000457137.6 ENSP00000393561.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457137.6Link to Ensembl Protein Viewer:ENSP00000393561.2Re-query CCDS DB by Nucleotide ID:ENST00000457137Re-query CCDS DB by Protein ID:ENSP00000393561
Original member Current member NCBI NM_001177972.3 NP_001171443.1 Accepted alive Link to Nucleotide Sequence:NM_001177972.3Link to Protein Sequence:NP_001171443.1Re-query CCDS DB by Nucleotide ID:NM_001177972Re-query CCDS DB by Protein ID:NP_001171443Link to BLAST:NP_001171443.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171443.1 203 Q6UXI7-3 203 100% 0 0

Chromosomal Locations for CCDS 54350.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 36716371 36716422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36729426 36729491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36743100 36743256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36754921 36755054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36758969 36759171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGAGGACTGTTGTTCTCACTATGAAGGCATCTGTTATTGAAATGTTCCTTGTTTTGCTGGTGACTGGAG
TACATTCAAACAAAGAAACGGCAAAGAAGATTAAAAGGCCCAAGTTCACTGTGCCTCAGATCAACTGCGA
TGTCAAAGCCGGAAAGATCATCGATCCTGAGTTCATTGTGAAATGTCCAGCAGGATGCCAAGACCCCAAA
TACCATGTTTATGGCACTGACGTGTATGCATCCTACTCCAGTGTGTGTGGCGCTGCCGTACACAGTGGTG
TGCTTGATAATTCAGGAGGGAAAATACTTGTTCGGAAGGTTGCTGGACAGTCTGGTTACAAAGGGAGTTA
TTCCAACGGTGTCCAATCGTTATCCCTACCACGATGGAGAGAATCCTTTATCGTCTTAGAAAGTAAACCC
AAAAAGGGTGTAACCTACCCATCAGCTCTTACATACTCATCATCGAAAAGTCCAGCTGCCCAAGCAGGCA
AGTGCTCACGTGTGATTGAATCTAAACCTTCTGAGTCCATGAACACGCGACGTGTTTTGGGAGATAGCGG
AGAAATTAACATCTTAACCGGTCAAGCTCCACTGGCTCTGGCAATATTTTAA

Translation (203 aa):
MRTVVLTMKASVIEMFLVLLVTGVHSNKETAKKIKRPKFTVPQINCDVKAGKIIDPEFIVKCPAGCQDPK
YHVYGTDVYASYSSVCGAAVHSGVLDNSGGKILVRKVAGQSGYKGSYSNGVQSLSLPRWRESFIVLESKP
KKGVTYPSALTYSSSKSPAAQAGKCSRVIESKPSESMNTRRVLGDSGEINILTGQAPLALAIF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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