NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54546.1 Public Homo sapiens 22 NCAPH2 24 110 108 CCDS HistoryNCBI Gene:29781Re-query CCDS DB by CCDS ID:54546.1Re-query CCDS DB by GeneID:29781See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54546.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299821.15 ENSP00000299821.11 Accepted alive Link to Ensembl Transcript Viewer:ENST00000299821.15Link to Ensembl Protein Viewer:ENSP00000299821.11Re-query CCDS DB by Nucleotide ID:ENST00000299821Re-query CCDS DB by Protein ID:ENSP00000299821
Original member Current member NCBI NM_001185011.2 NP_001171940.1 Accepted alive Link to Nucleotide Sequence:NM_001185011.2Link to Protein Sequence:NP_001171940.1Re-query CCDS DB by Nucleotide ID:NM_001185011Re-query CCDS DB by Protein ID:NP_001171940Link to BLAST:NP_001171940.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171940.1 606 Q6IBW4-4 606 100% 0 0

Chromosomal Locations for CCDS 54546.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 50508338 50508445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50516447 50516548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50517427 50517482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50517577 50517661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50517741 50517809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50517973 50518052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50518133 50518278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50518649 50518732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50519190 50519320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50520965 50521036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50521543 50521609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50521741 50521848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50521986 50522039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50522181 50522251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50522343 50522415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50522498 50522569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50522671 50522720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50522821 50522922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50523017 50523166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50523235 50523375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGGAGGACGTGGAGGCGCGCTTCGCCCACCTCTTGCAGCCCATCCGCGACCTCACCAAGAACTGGGAGG
TGGACGTGGCGGCCCAGCTGGGCGAGTATCTGGAGGAGCTGGATCAGATCTGCATTTCTTTTGACGAAGG
CAAGACCACAATGAACTTCATTGAGGCAGCGTTGTTGATCCAGGGCTCTGCCTGCGTCTACAGTAAGAAG
GTGGAATACCTCTACTCACTCGTCTACCAGGCCCTTGATTTCATCTCTGGAAAGAGGCGGGCCAAGCAGC
TCTCTTCGGTGCAGGAGGACAGGGCCAATGGGGTTGCCAGCTCCGGGGTCCCCCAGGAGGCAGAGAATGA
GTTCCTGTCGCTGGATGACTTCCCTGACTCCCGGACTAACGTGGATCTCAAGAATGATCAGACGCCCAGT
GAGGTCCTCATCATCCCCCTCCTGCCCATGGCCCTGGTGGCCCCTGATGAAATGGAGAAGAACAACAATC
CCCTGTACAGCCGTCAGGGTGAGGTCCTGGCCAGCCGGAAGGATTTCAGGATGAACACGTGCGTTCCCCA
CCCCAGAGGGGCCTTCATGTTGGAGCCAGAGGGCATGTCCCCCATGGAACCAGCGGGCGTTTCCCCCATG
CCAGGGACCCAGAAGGACACCGGGAGGACTGAGGAGCAGCCAATGGAAGTTTCCGTGTGCAGGAGCCCTG
TCCCAGCACTCGGCTTCTCCCAGGAGCCAGGCCCCTCTCCAGAAGGCCCGATGCCCCTGGGTGGGGGCGA
GGACGAGGATGCAGAGGAGGCAGTAGAGCTTCCTGAGGCCTCGGCCCCCAAGGCCGCTCTGGAGCCCAAG
GAGTCCAGGAGCCCGCAGCAGAGTGCTGCCCTGCCCAGGAGGTACATGCTGCGGGAGCGGGAGGGGGCCC
CAGAGCCTGCATCCTGCGTGAAGGAGACTCCAGACCCCTGGCAGAGCCTGGACCCCTTTGACTCCTTGGA
GTCTAAGCCCTTCAAGAAAGGTAGGCCTTACTCTGTGCCCCCCTGTGTGGAGGAGGCTCTGGGACAGAAG
CGCAAGAGGAAGGGCGCTGCCAAGCTGCAGGACTTCCACCAGTGGTACCTGGCTGCCTATGCAGACCATG
CCGACAGCAGGCGGCTTCGGCGAAAGGGTCCGTCCTTTGCAGACATGGAGGTCCTGTACTGGACACACGT
GAAGGAGCAGTTGGAAACTCTCCGGAAGCTGCAGAGGAGGGAGGTGGCTGAGCAGTGGCTGCGGCCTGCA
GAGGAGGACCACCTGGAGGATTCCCTGGAAGACCTGGGGGCAGCAGCAGATGACTTTCTAGAGCCTGAGG
AGTACATGGAGCCCGAGGGAGCAGACCCCAGGGAAGCCGCTGACCTTGACGCAGTGCCGATGTCCCTGAG
CTACGAGGAGCTGGTTCGAAGGAATGTGGAGCTCTTCATCGCCACCTCCCAGAAGTTTGTCCAGGAGACA
GAGCTGAGCCAGCGCATCAGGGACTGGGAGGACACAGTGCAGCCTCTGCTCCAGGAGCAGGAGCAGCATG
TGCCCTTTGACATCCACACCTATGGGGACCAGCTGGTCTCACGGTTCCCCCAGCTCAATGAGTGGTGTCC
CTTTGCGGAGCTGGTGGCTGGCCAGCCGGCCTTCGAGGTGTGTCGTTCCATGCTGGCCTCCCTGCAGCTG
GCCAATGACTACACAGTGGAGATAACCCAGCAGCCCGGGCTGGAGATGGCCGTGGACACCATGTCCCTGA
GACTGCTCACGCACCAGCGAGCGCACAAGCGCTTCCAGACCTACGCTGCCCCCTCCATGGCCCAGCCCTG
A

Translation (606 aa):
MEDVEARFAHLLQPIRDLTKNWEVDVAAQLGEYLEELDQICISFDEGKTTMNFIEAALLIQGSACVYSKK
VEYLYSLVYQALDFISGKRRAKQLSSVQEDRANGVASSGVPQEAENEFLSLDDFPDSRTNVDLKNDQTPS
EVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRKDFRMNTCVPHPRGAFMLEPEGMSPMEPAGVSPM
PGTQKDTGRTEEQPMEVSVCRSPVPALGFSQEPGPSPEGPMPLGGGEDEDAEEAVELPEASAPKAALEPK
ESRSPQQSAALPRRYMLREREGAPEPASCVKETPDPWQSLDPFDSLESKPFKKGRPYSVPPCVEEALGQK
RKRKGAAKLQDFHQWYLAAYADHADSRRLRRKGPSFADMEVLYWTHVKEQLETLRKLQRREVAEQWLRPA
EEDHLEDSLEDLGAAADDFLEPEEYMEPEGADPREAADLDAVPMSLSYEELVRRNVELFIATSQKFVQET
ELSQRIRDWEDTVQPLLQEQEQHVPFDIHTYGDQLVSRFPQLNEWCPFAELVAGQPAFEVCRSMLASLQL
ANDYTVEITQQPGLEMAVDTMSLRLLTHQRAHKRFQTYAAPSMAQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH