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Report for CCDS39042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39042.1 Public Mus musculus 5 Ube3c 23 108 98 CCDS HistoryNCBI Gene:100763Re-query CCDS DB by CCDS ID:39042.1Re-query CCDS DB by GeneID:100763See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39042.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049453.8 ENSMUSP00000045998.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049453.8Link to Ensembl Protein Viewer:ENSMUSP00000045998.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000049453Re-query CCDS DB by Protein ID:ENSMUSP00000045998
Original member Current member NCBI NM_133907.3 NP_598668.1 Accepted alive Link to Nucleotide Sequence:NM_133907.3Link to Protein Sequence:NP_598668.1Re-query CCDS DB by Nucleotide ID:NM_133907Re-query CCDS DB by Protein ID:NP_598668Link to BLAST:NP_598668.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598668.1 1083 Q80U95 1083 100% 0 0

Chromosomal Locations for CCDS 39042.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 29569515 29569580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29587275 29587328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29589888 29589962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29590810 29590956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29597069 29597184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29598859 29599016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29600641 29600794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29601132 29601352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29602196 29602347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29606907 29607094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29614908 29614994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29619228 29619385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29619555 29619787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29631192 29631296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29632750 29632837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29635631 29635728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29637638 29637770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29646410 29646657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29658210 29658422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29663463 29663651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29663776 29663842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29667914 29668044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 29674399 29674569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3252 nt):
ATGTTCAGCTTCGAAGGCGACTTCAAGACAAGGCCCAAAGTGTCTCTCGGTGGCGCGAGCAGGAAGGAAG
AA
AAGGCTTCTCTTTTACATCGCACTCAGGAAGAAAGACGCAAGAGAGAGGAAGAAAGGCGAAGATTGAA
A
AATGCAGTAATAATCCAATCTTTTATCCGAGGCTATAGAGACAGAAAACAACAATACTTCATCCAAAGA
AGC
GCGTTTGACCAATGCACTGACTCGGCTCAGCCTGGTGGTACCTTCTGCCTTGCTGATGGTCCCAACC
TT
ACCCTCTTGGTAAGGCAGCTTCTGTTCTTTTACAAGCAGAGTGAAGACTCCAAACGTTTGATATGGCT
T
TATCAGAACTTAATTAAACACAGCTCTCTGTTTGTCAAGCAATTGGATGGATCAGAGAGACTGACATGC
TTA
TTTCAAATAAAGAGGTTGATGAGCCTCTGTTGCAGGTTGCTGCAAAACTGTAGTGATGACAGTCTGA
AT
GTTGCACTTCCAATGCGAATGCTTGAGGTGTTTACATCTGAGAATACATACTTGCCTGTTTTACAAGA
T
TCTAGCTATGTGGTGTCAGTGATTGAACAAATTTTGCACTACATGGTTCACAGTGGATATTATAGATCT
CTC
TACTTGTTGATTAATAGCAAGCTTCCATCAAGTATTGAATATTCTGATTTATCTCGAGTTCCTATAG
CA
AAAATTTTGCTGGAGAATGTCCTAAAACCATTGCACTTTACGTATAGCTCCTGTCCTGAAGCCTCAAG
G
CATCAAGTTTTCTCAGCCTTCACAGAGGAGTTTCTGGGAGCACCTTTTACCGATCAAATTTTTCATTTC
GTC
ATTCCGGCCTTTGCAGATGCACAAACTGTGTTCCCTTATGAGCCCTTTCTCAATGCATTGTTGTTAC
TT
GAGAGTCAAAGTTCAAAACGGTGTAGTGGAGTGCCATGGCTCTTCTATTTTGTTTTAACTGTTGGCGA
G
AATTATTTAGGAGCACTCTCTGAGGATGGTCTACTGGTTTATCTGCGAGTGCTTCAGACCTTCCTCTCT
CAG
CTACCTGCTTCACCCACTGGTACAGGCTGTCCTGATTCCACCAGTGACTCTGAGGACGATAACGAGG
AG
ACTGACCAACCCAACAGCCCTGAGGATGGCAGGGTGTCAGCCCCATATATTACTGAAGAGTGTCTGAG
A
AAACTGGATACGAAGCAGCAAACCAACACCCTGCTGAACCTGGTGTGGAGGGACTCGGCCAGTGAGGAG
GTC
TTCACAAGGATGGCTTCTATCTGCCACACATTGATGGTGCAGCACCGAATGATGGTGCCCAAAGTCA
G
G
CTTCTCTACAGTTTAGCCTTCAATGCCAGGTTTTTGAGGCATCTTTGGTTTCTCATCTCTTCAATGAC
A
ACACAGATGATCACAGGATCTATGGTGCCATTGCTTCAGTTGATATCGCGGGGTTCGCCCATGTCTTTT
GAA
GATTCTAGTCGAATCATCCCACTCTTTTACCTCTTCAGCTCCTTGTTCAGTCATTCGCTGATCTCCA
TA
CATGACAATGAATTTTTTGGTGACCCCATAGAAGTTGTAGGTCAGAGACAATCATCCATGATGCCTTT
C
ACTCTGGAGGAGTTAATCCTGCTGTCACGATGCCTTCGAGATGCCTGCTTGGGGATCATCAAGCTAGCA
TAC
CCGGAAACAAAGCCAGAAGTTCGGGAAGAATATGTCACCGCATTTCAGAGTATTGGGGTCACTACTA
AT
TCTGAGATGCAGCAGTGCATACAAATGGAACAGAAGCGATGGGTTCAGCTGTTCAAGGTTATCACCAA
C
CTAGTGAAAATGCTGAAGTCTAGAGACACGAGGAGAAATTTCTGTCCTCCAAACCACTGGCTGTCAGAA
CAA
GAGGATATCAAAGCAGATAAAGTTACCCAGCTCTATGTACCTGCATCTAGACATGTGTGGCGATTCC
GG
AGGATGGGCAGGATTGGCCCACTGCAGTCCACCCTGGAGGTGGGTCTGGAGTCCTTACCCCTGTCTGT
G
TCTGAGGAACGACAGCTTGCCATCCTGACAGAACTGCCTTTTGTGGTTCCATTTGAGGAGCGAGTGAAG
ATC
TTTCAAAGGTTGATTTATGCTGATAAGCAAGAAGTTCAAGGCGATGGTCCATTTCTGGATGGAATCA
AT
GTTACTATAAGGAGAAATTATATTTATGAAGATGCTTATGACAAACTTTCTCCAGAAAATGAGCCTGA
T
TTGAAAAAACGGATCCGGGTGCACTTGCTCAATGCCCATGGCCTGGATGAAGCTGGCATCGATGGTGGT
GGT
ATTTTCAGAGAGTTTTTAAATGAACTACTGAAATCTGGATTTAACCCCAACCAGGGCTTCTTTAAGA
CT
ACTAATGAAGGGCTTCTATACCCCAACCCAGCTGCTCAGATGCTTGTGGGAGATTCTTTCGCAAGGCA
T
TACTACTTCCTAGGCAGAATGCTTGGAAAGGCTCTGTATGAAAACATGTTGGTGGAGCTACCCTTTGCT
GGC
TTTTTCCTGTCCAAGCTACTGGGAACCAGTGCAGATGTGGACATTCACCATCTTGCCTCATTGGACC
CC
GAAGTCTACAGGAACCTGCTTTTCCTCAAGAGCTATGAGGAGGATGTGGAGGAACTGGGACTGAACTT
T
ACTGTGGTGAACAATGACCTGGGAGAAGCCCAGGTGGTTGAACTAAAATTTGGTGGAAAAGACATCCCG
GTA
ACTGGGGCCAACCGAATTGCCTACATCCACCTGGTGGCTGACTACCGGCTGAACAAGCAGATCCGAC
CG
CATTGCCTAGCTTTCCGCCAGGGCCTGGCCAATGTTGTGAGCCTAGAGTGGCTCCGAATGTTTGACCA
A
CAGGAAATTCAGGTATTAATTTCTGGTGCACAAGTTCCTGTAAGTCTGGAGGACCTAAAATCCTTTACA
AAC
TATTCAGGGGGCTATTCTGCCGATCATCCTGTCATTAAAATCTTTTGGAGAGTTGTAGAAGGTTTCA
CT
GACGAAGAAAAGCGCAAGTTGCTCAAGTTTGTAACAAGTTGCTCTCGCCCCCCTCTCCTGGGTTTCAA
G
GAGCTATACCCTGCGTTTTGCATTCACAATGGAGGCTCTGACCTTGAGCGGCTACCTACAGCCAGCACC
TGC
ATGAACCTGCTGAAGCTCCCAGAGTTTTATGATGAAGCCCTGCTGCGAAGCAAGCTGCTGTATGCCA
TT
GAGTGTGCTGCTGGCTTTGAGCTGAGCTGA


Translation (1083 aa):
MFSFEGDFKTRPKVSLGGASRKEEKASLLHRTQEERRKREEERRRLKNAVIIQSFIRGYRDRKQQYFIQR
S
AFDQCTDSAQPGGTFCLADGPNLTLLVRQLLFFYKQSEDSKRL
IWLYQNLIKHSSLFVKQLDGSERLTC
L
FQIKRLMSLCC
RLLQNCSDDSLNVALPMRMLEVFTSENTYLPVLQDSSYVVSVIEQILHYMVHSGYYRS
L
YLLINSKLPSSIEYSDLSRVPIAKILLENVLKPLHFTYSSCPEAS
RHQVFSAFTEEFLGAPFTDQIFHF
V
IPAFADAQTVFPYEPFLNALLLLESQSSKRCSGVPWLFYFVLTVGENYL
GALSEDGLLVYLRVLQTFLS
Q
LPASPTGTGCPDSTSDSEDDNEETDQPNSP
EDGRVSAPYITEECLRKLDTKQQTNTLLNLVWRDSASEE
V
FTRMASICHTLMVQHRMMVPKV
RLLYSLAFNARFLRHLWFLISSMTTQMITGSMVPLLQLISRGSPMSF
E
DSSRIIPLFYLFSSLFSHSLISIHDNEFFGDPIE
VVGQRQSSMMPFTLEELILLSRCLRDACLGIIKLA
Y
PETKPEVREEYVTAFQSIGVTTNSEMQQCIQMEQKRWVQLFK
VITNLVKMLKSRDTRRNFCPPNHWLSE
Q
EDIKADK
VTQLYVPASRHVWRFRRMGRIGPLQSTLEVGLESLPLSVSEERQLAILTELPFVVPFEERVK
I
FQRLIYADKQEVQGDGPFLDGINVTIRRNYIYEDAYDKLSPEN
EPDLKKRIRVHLLNAHGLDEAGIDGG
G
IFREFLNELLKSGFNPNQGFFKTTNEGLLYPNPAAQMLVGDSFARHYYFLGRMLGK
ALYENMLVELPFA
G
FFLSKLLGTSADVDIHHLASLDPEVYRNLLFLKSYEEDVEELGLNFTVVNNDLGEAQ
VVELKFGGKDIP
V
TGANRIAYIHLVADYRLNKQIRPHCLAFRQGLANVVSLEWLRMFDQQEIQ
VLISGAQVPVSLEDLKSFT
N
YS
GGYSADHPVIKIFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCIHNGGSDLERLPTAST
C
MNLLKLPEFYDEALLRSKLLYAIECAAGFELS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser