NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50018.1 Public Mus musculus 17 Noxo1 23 108 98 CCDS HistoryNCBI Gene:71893Re-query CCDS DB by CCDS ID:50018.1Re-query CCDS DB by GeneID:71893See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019464.7 ENSMUSP00000019464.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019464.7Link to Ensembl Protein Viewer:ENSMUSP00000019464.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019464Re-query CCDS DB by Protein ID:ENSMUSP00000019464
Original member Current member NCBI NM_001357836.1 NP_001344765.1 Accepted alive Link to Nucleotide Sequence:NM_001357836.1Link to Protein Sequence:NP_001344765.1Re-query CCDS DB by Nucleotide ID:NM_001357836Re-query CCDS DB by Protein ID:NP_001344765Link to BLAST:NP_001344765.1
Original member Current member NCBI NM_027988.4 NP_082264.2 Accepted alive Link to Nucleotide Sequence:NM_027988.4Link to Protein Sequence:NP_082264.2Re-query CCDS DB by Nucleotide ID:NM_027988Re-query CCDS DB by Protein ID:NP_082264Link to BLAST:NP_082264.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344765.1 349 Q8VCM2-1 349 100% 0 0
NP_082264.2 349 Q8VCM2-1 349 100% 0 0

Chromosomal Locations for CCDS 50018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24698343 24698408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24698518 24698598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24698786 24698861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24698945 24699122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24699269 24699450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24699544 24699657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24699898 24700015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24700121 24700355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGCAAGCCCAAGACACCCAGTATCAGCCCATGCTGTAGCCTTGGTGCAAATGGACCGACTCCAGACAT
TTGCCTTCTCCGTGTGCTGGTCAGACAACAGTGACACATTTGTGCGGAGGAGCTGGGATGAGTTCAGGCA
GCTCCAGAAGACCCTTAAGAAAACCTTCCCAGTGGAGGCAGGCCTGCTACGGAGATCTGAACAAGTTCTT
CCCAAGCTTCCTGATGCTCCATTGCTGACACGTCGGGGGCATACTGGTCGAGGACTGGTACGTTTGCGGC
TGCTGGACACCTATGTACAGGCATTGCTGGCAACCTCAGAACACATATTGAGGAGTTCAGCACTTCACGG
CTTCTTTGTACCCAAACCTCTGGATCTGGAGCCCATGCTGCCTCCTGGCAGCCTGGTGATCCTGCCTACA
CCAGAGGAGCCCTTATCCCAACCCAGAGGCAGCCTTGACATTCATAGCCTGGAGGCTCAGAGCATTCCCT
GTGTACAGCCTTTCCACACTCTTGACATAAGAGACAGACCTTTCCACACCAAGGCTCAAGAAATTCTGGA
CATATTACTACGACATCCTTCAGGCTGGTGGCTGGTGGAGAACAAGGATCAGCAGGTAGCCTGGTTTCCA
GCTCCCTACCTGGAGGAGGTAGCAACGTGCCAAGGCCAGGAGTCAGGCCTGGCTTTGCAAGGAAGTGGGA
GGCAGTTCTGCACTACTCAGGCCTACGAGGGCAGTCGCTCTGATGAGCTATCCGTGCCCTCAGGGGCACG
TGTCCATGTGCTGGAGACCTCAGACCGAGGCTGGTGGCTGTGCAGGTATAATGGCCGGACAGGCCTACTC
CCTGCAATGTCGCTGCAACCTGAAGGGCTGGGCTCGCTCCTGGGCAGGCCAGGGTTCCCAGACAGTGCTG
GGGCAGACAAGGTGGCTGAGGACAGGACCATTCCCCCTGTAGTACCAACTCGTCCCTGTATGAGTGCCAT
CCAGAGTCGATGCTGCTCCATTACCCGCAGGGCACTGGGACAGGAACAAGGGACTCGGGTTCCCCGTTGA

Translation (349 aa):
MASPRHPVSAHAVALVQMDRLQTFAFSVCWSDNSDTFVRRSWDEFRQLQKTLKKTFPVEAGLLRRSEQVL
PKLPDAPLLTRRGHTGRGLVRLRLLDTYVQALLATSEHILRSSALHGFFVPKPLDLEPMLPPGSLVILPT
PEEPLSQPRGSLDIHSLEAQSIPCVQPFHTLDIRDRPFHTKAQEILDILLRHPSGWWLVENKDQQVAWFP
APYLEEVATCQGQESGLALQGSGRQFCTTQAYEGSRSDELSVPSGARVHVLETSDRGWWLCRYNGRTGLL
PAMSLQPEGLGSLLGRPGFPDSAGADKVAEDRTIPPVVPTRPCMSAIQSRCCSITRRALGQEQGTRVPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH