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Report for CCDS28381.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28381.1 Public Mus musculus 17 Ccr6 23 108 98 CCDS HistoryNCBI Gene:12458Re-query CCDS DB by CCDS ID:28381.1Re-query CCDS DB by GeneID:12458See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28381.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097418.7 ENSMUSP00000095029.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097418.7Link to Ensembl Protein Viewer:ENSMUSP00000095029.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000097418Re-query CCDS DB by Protein ID:ENSMUSP00000095029
Original member Current member EBI ENSMUST00000167956.9 ENSMUSP00000128529.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167956.9Link to Ensembl Protein Viewer:ENSMUSP00000128529.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167956Re-query CCDS DB by Protein ID:ENSMUSP00000128529
Original member Current member EBI ENSMUST00000166348.9 ENSMUSP00000128559.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166348.9Link to Ensembl Protein Viewer:ENSMUSP00000128559.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000166348Re-query CCDS DB by Protein ID:ENSMUSP00000128559
Original member Current member EBI ENSMUST00000164411.9 ENSMUSP00000131153.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164411.9Link to Ensembl Protein Viewer:ENSMUSP00000131153.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164411Re-query CCDS DB by Protein ID:ENSMUSP00000131153
Original member Current member EBI ENSMUST00000180103.2 ENSMUSP00000135945.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180103.2Link to Ensembl Protein Viewer:ENSMUSP00000135945.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180103Re-query CCDS DB by Protein ID:ENSMUSP00000135945
Original member Current member EBI ENSMUST00000177568.8 ENSMUSP00000137249.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177568.8Link to Ensembl Protein Viewer:ENSMUSP00000137249.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177568Re-query CCDS DB by Protein ID:ENSMUSP00000137249
Original member Current member EBI ENSMUST00000231545.1 ENSMUSP00000156324.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231545.1Link to Ensembl Protein Viewer:ENSMUSP00000156324.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231545Re-query CCDS DB by Protein ID:ENSMUSP00000156324
Original member Current member NCBI NM_001190333.1 NP_001177262.1 Accepted alive Link to Nucleotide Sequence:NM_001190333.1Link to Protein Sequence:NP_001177262.1Re-query CCDS DB by Nucleotide ID:NM_001190333Re-query CCDS DB by Protein ID:NP_001177262Link to BLAST:NP_001177262.1
Original member Current member NCBI NM_001190334.1 NP_001177263.1 Accepted alive Link to Nucleotide Sequence:NM_001190334.1Link to Protein Sequence:NP_001177263.1Re-query CCDS DB by Nucleotide ID:NM_001190334Re-query CCDS DB by Protein ID:NP_001177263Link to BLAST:NP_001177263.1
Original member Current member NCBI NM_001190335.1 NP_001177264.1 Accepted alive Link to Nucleotide Sequence:NM_001190335.1Link to Protein Sequence:NP_001177264.1Re-query CCDS DB by Nucleotide ID:NM_001190335Re-query CCDS DB by Protein ID:NP_001177264Link to BLAST:NP_001177264.1
Original member Current member NCBI NM_001190336.1 NP_001177265.1 Accepted alive Link to Nucleotide Sequence:NM_001190336.1Link to Protein Sequence:NP_001177265.1Re-query CCDS DB by Nucleotide ID:NM_001190336Re-query CCDS DB by Protein ID:NP_001177265Link to BLAST:NP_001177265.1
Original member Current member NCBI NM_001190337.1 NP_001177266.1 Accepted alive Link to Nucleotide Sequence:NM_001190337.1Link to Protein Sequence:NP_001177266.1Re-query CCDS DB by Nucleotide ID:NM_001190337Re-query CCDS DB by Protein ID:NP_001177266Link to BLAST:NP_001177266.1
Original member Current member NCBI NM_009835.4 NP_033965.1 Accepted alive Link to Nucleotide Sequence:NM_009835.4Link to Protein Sequence:NP_033965.1Re-query CCDS DB by Nucleotide ID:NM_009835Re-query CCDS DB by Protein ID:NP_033965Link to BLAST:NP_033965.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177262.1 367 O54689 367 100% 0 0
NP_001177263.1 367 O54689 367 100% 0 0
NP_001177264.1 367 O54689 367 100% 0 0
NP_001177265.1 367 O54689 367 100% 0 0
NP_001177266.1 367 O54689 367 100% 0 0
NP_033965.1 367 O54689 367 100% 0 0

Chromosomal Locations for CCDS 28381.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8255965 8257068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGAATTCCACAGAGTCCTACTTTGGAACGGATGATTATGACAACACAGAGTATTATTCTATTCCTCCAG
ACCATGGGCCATGCTCCCTAGAAGAGGTCAGAAACTTCACCAAGGTATTTGTGCCAATTGCCTACTCCTT
AATATGTGTCTTTGGCCTCCTGGGCAACATTATGGTGGTGATGACCTTTGCCTTCTACAAGAAAGCCAGA
TCCATGACTGACGTCTACCTGTTGAACATGGCCATCACAGACATACTCTTTGTCCTCACCCTACCGTTCT
GGGCAGTTACTCATGCCACCAACACTTGGGTTTTCAGCGATGCACTGTGTAAACTGATGAAAGGCACATA
TGCGGTCAACTTTAACTGTGGGATGCTGCTCCTGGCCTGTATCAGCATGGACCGGTACATTGCCATCGTC
CAGGCAACCAAATCTTTCCGGGTACGCTCCAGAACACTGACGCACAGTAAGGTCATCTGTGTGGCAGTGT
GGTTCATCTCCATCATCATCTCAAGCCCTACATTTATCTTCAACAAGAAATACGAGCTGCAGGATCGTGA
TGTCTGTGAGCCACGGTACAGGTCTGTCTCAGAGCCCATCACGTGGAAGCTGCTGGGTATGGGACTGGAG
CTGTTCTTTGGGTTCTTCACCCCTTTGCTGTTTATGGTGTTCTGCTATCTGTTCATTATCAAGACCTTGG
TGCAGGCCCAGAACTCCAAGAGGCACAGAGCAATCCGAGTCGTGATCGCTGTGGTTCTCGTGTTCCTGGC
TTGTCAGATCCCTCACAACATGGTCCTCCTCGTGACTGCGGTCAACACGGGCAAAGTGGGCCGGAGCTGC
AGCACCGAGAAAGTCCTCGCCTACACCAGGAACGTGGCCGAGGTCCTGGCTTTCCTGCATTGCTGCCTCA
ACCCCGTGTTGTATGCGTTTATTGGACAGAAATTCAGAAACTACTTCATGAAGATCATGAAGGATGTGTG
GTGTATGAGAAGGAAGAATAAGATGCCTGGCTTCCTCTGTGCCCGGGTTTACTCGGAAAGCTACATCTCC
AGGCAGACCAGTGAGACCGTCGAAAATGATAATGCATCGTCCTTTACCATGTAA

Translation (367 aa):
MNSTESYFGTDDYDNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVMTFAFYKKAR
SMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNFNCGMLLLACISMDRYIAIV
QATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKYELQDRDVCEPRYRSVSEPITWKLLGMGLE
LFFGFFTPLLFMVFCYLFIIKTLVQAQNSKRHRAIRVVIAVVLVFLACQIPHNMVLLVTAVNTGKVGRSC
STEKVLAYTRNVAEVLAFLHCCLNPVLYAFIGQKFRNYFMKIMKDVWCMRRKNKMPGFLCARVYSESYIS
RQTSETVENDNASSFTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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